Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30854
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53439| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         36   0.030
SB_30330| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)        29   4.6  
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_53439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 30/56 (53%), Positives = 36/56 (64%)
 Frame = +3

Query: 3   RPTRYHAVCNDGRIPENEGQHLAYYLCHLYARCMRAVSYPTPTYYAHLACLRARSL 170
           RPT YH + +D     ++ Q L Y LCH +ARC R+VS P P YYAHLA  RAR L
Sbjct: 4   RPTHYHVLYDDNGFSADKLQALTYQLCHTFARCTRSVSMPAPAYYAHLAAFRARGL 59


>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 6   PTRYHAVCNDGRIPENEGQHLAYYLCHLYARCMRAVSYPTPTYYAH-LACLR 158
           PT Y+ + +   +  +  Q L+Y L HLY      V  P P  YAH LA LR
Sbjct: 701 PTHYNVIHDTTGLRPDHWQQLSYKLTHLYYNWPGTVRVPAPCQYAHKLAFLR 752


>SB_30330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 319 TYNNE*LHS*SYYININNHAFCNENYKHVSY 411
           T NN  LH  +   NIN H+F + N  H+ Y
Sbjct: 109 TRNNNTLHR-TLITNINEHSFLSSNSNHIGY 138


>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
          Length = 350

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 12  RYHAVCNDGRIPENE-GQHLAYYLCHLYARCMRAVSY 119
           R H VC   R  ++  G+H  YY  H Y +C   V Y
Sbjct: 96  RCHRVCRRYRYCKSYFGKHKCYYKYHCYLKCFCKVKY 132


>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 649 VSHAKSVKLRSETSLVYLLYFVRA--KPTGLTRYKEH*FLNFSLTQRSFLKKIIRFIFSL 476
           + H     L+     V++ + +RA  K    T + +H  L  +L QR +   I   + + 
Sbjct: 182 IKHMLRATLKQRKYTVHIKHMLRATLKQRKYTVHIKH-MLRATLKQRKYTVHIKHMLRAT 240

Query: 475 KKS*FYTKSYLISVMKQSYL*GKRRVYNFHCK 380
            K   YT+ Y + +        K+R Y  H K
Sbjct: 241 LKQRKYTRKYTVHIKHMLRATLKQRKYTVHIK 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,245,979
Number of Sequences: 59808
Number of extensions: 459260
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)