Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30854
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    25   0.65 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    25   0.65 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    25   0.65 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    25   0.65 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.65 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.65 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   2.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   2.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   2.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   2.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   2.6  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    23   3.4  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 349 SYYININNHAFCNENYKHVSY 411
           S Y N NN+ + N NYK + Y
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQY 112


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 349 SYYININNHAFCNENYKHVSY 411
           S Y N NN+ + N NYK + Y
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQY 112


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 349 SYYININNHAFCNENYKHVSY 411
           S Y N NN+ + N NYK + Y
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQY 112


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 349 SYYININNHAFCNENYKHVSY 411
           S Y N NN+ + N NYK + Y
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQY 112


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 316 NTYNNE*LHS*SYYININNHAFCNENYKHVSY 411
           ++ +N  +H+ +Y  N NN+ + N NY    Y
Sbjct: 82  SSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 316 NTYNNE*LHS*SYYININNHAFCNENYKHVSY 411
           ++ +N  +H+ +Y  N NN+ + N NY    Y
Sbjct: 82  SSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -2

Query: 791 III*SHSNWSDETNFKSGVLIPPNVEIQYI 702
           I++ ++++ + E  +KS VLI PN ++ ++
Sbjct: 113 IVLFNNADGNYEVRYKSNVLIYPNGDVLWV 142


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 361 NINNHAFCNENYKHVSYPINMI 426
           N N   + N NYK + Y IN I
Sbjct: 88  NYNYSNYNNNNYKQLCYNINYI 109


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 361 NINNHAFCNENYKHVSYPINMI 426
           N N   + N NYK + Y IN I
Sbjct: 88  NYNYSNYNNNNYKQLCYNINYI 109


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 361 NINNHAFCNENYKHVSYPINMI 426
           N N   + N NYK + Y IN I
Sbjct: 88  NYNYSNYNNNNYKQLCYNINYI 109


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 361 NINNHAFCNENYKHVSYPINMI 426
           N N   + N NYK + Y IN I
Sbjct: 88  NYNYSNYNNNNYKQLCYNINYI 109


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 361 NINNHAFCNENYKHVSYPINMI 426
           N N   + N NYK + Y IN I
Sbjct: 88  NYNYSNYNNNNYKQLCYNINYI 109


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 361 NINNHAFCNENYKHVSYPINMI 426
           N N   + N NYK + Y IN I
Sbjct: 88  NYNYSNYNNNNYKQLCYNINHI 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,025
Number of Sequences: 438
Number of extensions: 4398
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)