BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30853 (835 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.7 SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 26 5.7 SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 7.6 >SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Schizosaccharomyces pombe|chr 3|||Manual Length = 791 Score = 26.2 bits (55), Expect = 5.7 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 331 VFWGYIVLFGLWYSGYLVVTNW 266 VFW +IVL GL+Y Y V ++ Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377 >SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Schizosaccharomyces pombe|chr 2|||Manual Length = 765 Score = 26.2 bits (55), Expect = 5.7 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = -1 Query: 310 LFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAK 131 LF + SGYL + GF +++ TS GLT ++G GT + GI+K Sbjct: 389 LFSVDASGYL------KMGFMANLEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISK 442 Query: 130 LTAAK 116 + K Sbjct: 443 TNSWK 447 >SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 25.8 bits (54), Expect = 7.6 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 827 WFLAVANFGCLTGMPSFSCKSQSPSAE 747 +F +VANFG + GMP F ++ AE Sbjct: 359 FFHSVANFGWIYGMPLFFQSIKNEGAE 385 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,042,483 Number of Sequences: 5004 Number of extensions: 56890 Number of successful extensions: 195 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 195 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 410448950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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