Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30853
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.7  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   5.7  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.6  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 331 VFWGYIVLFGLWYSGYLVVTNW 266
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 310 LFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAK 131
           LF +  SGYL      + GF +++   TS GLT   ++G        GT    +  GI+K
Sbjct: 389 LFSVDASGYL------KMGFMANLEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISK 442

Query: 130 LTAAK 116
             + K
Sbjct: 443 TNSWK 447


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 827 WFLAVANFGCLTGMPSFSCKSQSPSAE 747
           +F +VANFG + GMP F    ++  AE
Sbjct: 359 FFHSVANFGWIYGMPLFFQSIKNEGAE 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,483
Number of Sequences: 5004
Number of extensions: 56890
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)