Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30853
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 29 3.5
01_05_0496 + 22728097-22728401,22728506-22728670,22728771-22729041 29 3.5
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 4.6
02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134... 29 4.6
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 4.6
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 6.0
08_02_1167 + 24847689-24848156 29 6.0
08_01_0063 + 439640-439740,440067-440145,440586-440684,440767-44... 29 6.0
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 29 6.0
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 28 8.0
05_04_0380 + 20792090-20792662 28 8.0
01_01_0115 - 856957-858055,858479-858538,858802-859583 28 8.0
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 316 IVLFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSIL 197
I+LFG + L + NW ++GF+ S + +GLT + L
Sbjct: 684 ILLFGGFIIPRLSMPNWLKWGFWISPLSYAEIGLTGNEFL 723
>01_05_0496 + 22728097-22728401,22728506-22728670,22728771-22729041
Length = 246
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 666 GASAASGVLISGNCSSIAFYSRSQVDLL 583
G +A GV S N S IAF +RS+VD+L
Sbjct: 109 GGAATGGVPRSKNGSKIAFKTRSEVDVL 136
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +2
Query: 419 EAKSADIKVEEPAAQPEDSKTE--VQATVAEIRKK 517
E++S DIK + +AQP +K E VQAT++ + KK
Sbjct: 394 ESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKK 428
>02_01_0201 -
1347868-1347925,1348040-1348135,1348447-1348523,
1349385-1349453,1349576-1349629,1350295-1350350,
1350487-1350694,1350978-1351066,1351163-1351187
Length = 243
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 492 ACTSVFESSG*AAGSSTLISADFASASGISDDF 394
+CT +F+SS +A + ++A FA AS D+F
Sbjct: 64 SCTYIFDSSDASASGAADVAATFAKASRKMDEF 96
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 401 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVQATVAEIRKKK 520
+E P AEA S + K EEP AA E +K E +A A + K
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAK 209
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 63 RRVTGSIF--KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAA 236
RRV+G +F LL+C AA A PVA + P+ +D +K + A
Sbjct: 219 RRVSGIVFLTSFAALLVCSVVAAAIAAPPVAAALAAAASMPVGSAGKWMDSLLKKYQDAL 278
Query: 237 ATEEKKPNLLQLVT 278
++ + +Q+ T
Sbjct: 279 HGHKEVVSAMQVGT 292
>08_02_1167 + 24847689-24848156
Length = 155
Score = 28.7 bits (61), Expect = 6.0
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Frame = +2
Query: 248 EETEPAPVSNDEVPAIP------EAKK-DDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSE 406
EET+PA PA EAK+ + A E+++ AK E
Sbjct: 53 EETKPADDQAAAAPAETVAEAEAEAKEAEPAAAEEAEPEAETAPPAAIAEAEAGEAKEPE 112
Query: 407 IPDAEAKSADIKVEEPAAQPEDSKTEVQA 493
P+AEA++A VEE AA P + E +A
Sbjct: 113 -PEAEAEAAAAPVEEAAAAPVEVAEEAEA 140
>08_01_0063 +
439640-439740,440067-440145,440586-440684,440767-440880,
441218-441381,442237-442312,442502-442587,442706-442861,
442934-443264
Length = 401
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 135 AMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKPNLLQLVT 278
A PV+E + A ++EV + DS+ P AT+E +L++ T
Sbjct: 179 AQPVSESSIIRKASSVMEVLKDVLDSMDPRHPEGATDEFVLDLVEQCT 226
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Frame = +2
Query: 248 EETEPAPVSNDEVPAIPE-AKKDDIAPEDS----DIAXXXXXXXXXXXXXXXXAKSSEIP 412
++ EP S ++P E +++ I PE S DI +S +P
Sbjct: 1262 QDIEPECPSPPQIPESKELSQQSKILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILP 1321
Query: 413 DAEAKSADIKVEEPAAQPEDSKTEV 487
++ + + DIK E+P+ P EV
Sbjct: 1322 ESSSDNQDIKCEDPSPTPISKSKEV 1346
>07_02_0012 -
11770058-11770770,11770919-11771000,11771064-11771072,
11771630-11771877,11772006-11772183,11772270-11772278
Length = 412
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 168 PAQPILEVAPKIDDSVKPTEVAAATE 245
P P E PK+DD +P +VA +TE
Sbjct: 222 PLPPPSESPPKVDDDNEPPKVAGSTE 247
>05_04_0380 + 20792090-20792662
Length = 190
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 422 AKSADIKVEEPAAQPEDSKTEVQATVAEIRKKKNLVLLMQKVL 550
A+SAD K +E A+ D K V AT +KK ++ K L
Sbjct: 145 AESADEKKKEQLAEAADEKVSVTATATPKKKKGGRIMKACKKL 187
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 705 GFVLIYRNCLLTLGASAASGVLISGNCSSIAFYSR-SQVDLLHHV 574
G+ +Y+ LL A A VL + NC+ F S S + +HH+
Sbjct: 342 GYGSVYKGVLLPGNAHVAVKVLGNSNCNGEEFISEVSTIGRIHHI 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,940,866
Number of Sequences: 37544
Number of extensions: 375942
Number of successful extensions: 1084
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -