Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30853
         (835 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 34   0.12 
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)                  31   1.5  
SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 404 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEI 508
           E P  EA+S D KVE P  + E  + EV+ATV E+
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEV 56


>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
          Length = 1009

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 111 IAFAAVSLAMPVAEE--KDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKP 257
           +A  A  +A  + EE   D+  A P LE A K  D++KP++++     K P
Sbjct: 732 VANEAAGVAQGIKEECEGDLAEALPALEAALKALDTLKPSDISMVKSMKNP 782


>SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -1

Query: 265 SRFGFFSSVAAATSVGLTESSIL----GATSRIG*AGTTSFSSATGIA 134
           SR G  SSV  A+SVGL   + L    G  SR G A      S  G+A
Sbjct: 412 SRVGLASSVGLASSVGLASRASLALRAGLASRAGLASRVGLPSCVGLA 459



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 265 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 134
           SR G  S    A+ VG   +S +G  SR+G A +   +S+ G+A
Sbjct: 388 SRVGLVSRAGLASRVG--RASRVGLASRVGLASSVGLASSVGLA 429



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 265 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 134
           SR G  S V   + VGL  +S +G  SR+G A +   +S  G+A
Sbjct: 442 SRAGLASRVGLPSCVGL--ASRVGLASRVGLANSVGLASRVGLA 483



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 256 GFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIA 134
           G  S V  A+ VGL  S  +G  SR+G A +   +S  G+A
Sbjct: 457 GLASRVGLASRVGLANS--VGLASRVGLASSVGLASRVGLA 495



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 265 SRFGFFSSVAAATSVGLTESSILGATSRIG*AGTTSFSSATGIAKL 128
           SR G  S    A   GL  S  +G  SR+G A     +S+ G+A L
Sbjct: 496 SRVGLVSRAGLALRAGLASS--VGLVSRVGLASRVGRASSVGLASL 539


>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 209 LG*TYRSSCCH*REETEPAPVSNDEVPAIPEAKKDDIAPEDSD 337
           LG T+ S  C  +EET   P S DE   + E+ ++D  P +SD
Sbjct: 186 LGVTFIS--CFGKEETVEEPPSIDEPTPVAESPQEDELPNESD 226


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 398 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAE 505
           ++E+P  +A ++  + E PAA+PE +  E +A V +
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVED 622


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 425 KSADIKVEEPAAQPEDSKTEVQATVAEIRK---KKNLVLLMQKVLPTQLPSFPTW 580
           ++ DI VE PA+    +KTE +   AE+ K    +    L+ +VL +  P+ PT+
Sbjct: 781 RNEDIVVEVPASNEPAAKTEDEIRKAEMCKFEQAQEAEDLISEVLKSYAPTLPTY 835


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 422 AKSADIKVEEPAAQPEDSKTEVQATVAEIRKKKNLVLLMQK 544
           A  AD+  EEPA++   ++TE+     E  K K+L ++ Q+
Sbjct: 340 AYMADVDDEEPASESLATRTEISELYTESAKLKSLGVIHQE 380


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,571,371
Number of Sequences: 59808
Number of extensions: 428030
Number of successful extensions: 1488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)