Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30853
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF098986-6|AAC67427.1| 484|Caenorhabditis elegans Hypothetical ... 31 0.77
U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical pr... 30 2.3
U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical pr... 30 2.3
AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin p... 30 2.3
AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin p... 30 2.3
AC006645-9|AAF39841.2| 293|Caenorhabditis elegans Nematode asta... 28 7.2
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 9.5
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 9.5
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 9.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 9.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 9.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 9.5
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 248 EETEPAPVSNDEVPAIPEAKKDDIAPEDSDI 340
E+T P P +E+P +PE ++ P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 248 EETEPAPVSNDEVPAIPEAKKDDIAPEDSDI 340
E+T P P +E+P +PE ++ P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562
>AF098986-6|AAC67427.1| 484|Caenorhabditis elegans Hypothetical
protein C36C9.5 protein.
Length = 484
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 428 SADIKVEEPAAQPEDSKTEVQATVAEI--RKKKNLVLLMQKVLPTQLPSFPTW*RRSTWL 601
++DI + +P QP +S + Q+ + R KK + ++ T P + W RR L
Sbjct: 101 NSDIPIPQPVPQPLNSYSLFQSCSTKFLDRNKKEEIFEWDEIKATNHPEYKIWLRRRETL 160
Query: 602 LL 607
LL
Sbjct: 161 LL 162
>U00025-4|AAN65312.1| 606|Caenorhabditis elegans Hypothetical
protein PAR2.4b protein.
Length = 606
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 126 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 242
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353
>U00025-3|AAA50619.1| 804|Caenorhabditis elegans Hypothetical
protein PAR2.4a protein.
Length = 804
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 126 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 242
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551
>AB110824-1|BAD80739.1| 606|Caenorhabditis elegans chondroitin
polymerizing factor-S protein.
Length = 606
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 126 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 242
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353
>AB110823-1|BAD80738.1| 804|Caenorhabditis elegans chondroitin
polymerizing factor protein.
Length = 804
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 126 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 242
V++ +PVA EKDV+PA+ +L ++ + PTE A T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551
>AC006645-9|AAF39841.2| 293|Caenorhabditis elegans Nematode astacin
protease protein 2 protein.
Length = 293
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 189 VAPKIDDSVKPTEVAAATEEKKPNL-LQLVTTRYPLYQRPK 308
VAPK+ + K E+A +T+ +K ++L+ T+ P ++ K
Sbjct: 15 VAPKVLEPEKDDEIAVSTQREKTFFDMKLILTKLPTFEPSK 55
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = +3
Query: 528 CY*CRRFCRLSCHHSQHGEEDR-LGSYCRKRC--CCN 629
C C+ FC C H G +R G C K C C N
Sbjct: 1808 CPPCKAFCTNKCEHQSCGAGERGFGRDCSKLCALCVN 1844
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 227 SSCCH*REETEPAPVSNDEVPAIPEAKKDDIAPE 328
SS + ++ T+ A ND+ P + +AKK+++ E
Sbjct: 731 SSTAYKKKYTKKAKKDNDDAPKVKKAKKEEVPEE 764
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 227 SSCCH*REETEPAPVSNDEVPAIPEAKKDDIAPE 328
SS + ++ T+ A ND+ P + +AKK+++ E
Sbjct: 744 SSTAYKKKYTKKAKKDNDDAPKVKKAKKEEVPEE 777
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +2
Query: 251 ETEPAPVSNDEVPAIPEAKKDDIAPEDSDIA-XXXXXXXXXXXXXXXXAKSSEIPDAEAK 427
E +PA + +V +PE + P +A K +P+ A
Sbjct: 5510 EVQPAEIVEQKVVPVPETSAPTVEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPETSAP 5569
Query: 428 SADIKVEEPAAQPEDSKTEVQATVAEIRKKKNLVLLMQKVLPTQLPS 568
+ + VE+ A P +SK + AEI ++K+ V + + PT P+
Sbjct: 5570 TVEPTVEKLA--PVESKETSEVEPAEIVEQKD-VPVPETSAPTVEPT 5613
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +2
Query: 251 ETEPAPVSNDEVPAIPEAKKDDIAPEDSDIA-XXXXXXXXXXXXXXXXAKSSEIPDAEAK 427
E +PA + +V +PE + P +A K +P+ A
Sbjct: 5530 EVQPAEIVEQKVVPVPETSAPTVEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPETSAP 5589
Query: 428 SADIKVEEPAAQPEDSKTEVQATVAEIRKKKNLVLLMQKVLPTQLPS 568
+ + VE+ A P +SK + AEI ++K+ V + + PT P+
Sbjct: 5590 TVEPTVEKLA--PVESKETSEVEPAEIVEQKD-VPVPETSAPTVEPT 5633
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = +2
Query: 251 ETEPAPVSNDEVPAIPEAKKDDIAPEDSDIA-XXXXXXXXXXXXXXXXAKSSEIPDAEAK 427
E +PA + +V +PE + P +A K +P+ A
Sbjct: 5530 EVQPAEIVEQKVVPVPETSAPTVEPTVEKLAPVESKETSEVEPAEIVEQKDVPVPETSAP 5589
Query: 428 SADIKVEEPAAQPEDSKTEVQATVAEIRKKKNLVLLMQKVLPTQLPS 568
+ + VE+ A P +SK + AEI ++K+ V + + PT P+
Sbjct: 5590 TVEPTVEKLA--PVESKETSEVEPAEIVEQKD-VPVPETSAPTVEPT 5633
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,986
Number of Sequences: 27780
Number of extensions: 320208
Number of successful extensions: 1081
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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