Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30853
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    34   0.13 
At3g49990.1 68416.m05466 expressed protein                             33   0.23 
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate...    33   0.23 
At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to ...    30   2.2  
At3g01290.1 68416.m00037 band 7 family protein similar to hypers...    29   3.8  
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family...    29   5.0  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   5.0  

>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = -1

Query: 229 TSVGLTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 113
           T++ +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 108 TALEITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 407 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEIRKKKNLV 529
           +P   A+  D+K E P A+P   KT  Q +  E +++KN V
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEEKKERKNAV 462


>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
           contains weak similarity to vacuolar calcium binding
           protein [Raphanus sativus] gi|9049359|dbj|BAA99394
          Length = 152

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 248 EETEPAPVSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAK 427
           EETE A V   E P + E KKD+ AP ++ +                  K  E+ + + +
Sbjct: 65  EETEEAQV---ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTE 118

Query: 428 SADIKV-EEPAAQPEDSKTEVQATV 499
            A + V EE   + E+ K  V+A+V
Sbjct: 119 EAPVVVEEEKKPEAEEEKPAVEASV 143


>At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to
           EXL3 (GP:15054386) [Arabidopsis thaliana]
          Length = 337

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 316 IVLFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG 176
           +V+F ++   Y + T  S FGF  +  A    GL E+SIL     +G
Sbjct: 254 LVVFDIYQPLYDLATRPSEFGFAEARRACCGTGLLETSILCNPKSVG 300


>At3g01290.1 68416.m00037 band 7 family protein similar to
           hypersensitive-induced response protein [Zea mays]
           GI:7716470; contains Pfam profile PF01145: SPFH domain /
           Band 7 family
          Length = 285

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 227 FGRFNRVINFGRDF*NWLSGNYV 159
           FG+F +V+N G  F  W+ G+YV
Sbjct: 21  FGKFQKVLNPGLQFVPWVIGDYV 43


>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 370

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
 Frame = +2

Query: 395 KSSEIPDAEA-KSADIKVEEPAAQPEDSKT-EVQATVAEIRKKKNLVLL-MQKVLPTQLP 565
           K  E+P  EA K  +I+  E    PE  K  E+Q    E+ K   +  L   KV   Q P
Sbjct: 201 KLPEVPKLEAPKVPEIQKPELPKMPELPKMPEIQKP--ELPKLPEVPKLEAPKVPEIQKP 258

Query: 566 SFPTW*RRSTWLLL*KAMLLQFPEIKTPEAADAPKVSRQFL*MRTKPADISPDAPK 733
             P          + K  L + PEI+ PE    P+V +  L   T P     +APK
Sbjct: 259 ELPKMPELPKMPEIQKPELPKMPEIQKPELPKVPEVPKPEL--PTVPEVPKSEAPK 312


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 278 DEVPAIPEAKKDDIAPE 328
           D+  +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,996,779
Number of Sequences: 28952
Number of extensions: 300742
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)