BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30852 (759 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 207 1e-54 SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 201 8e-53 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 89 6e-19 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 77 4e-15 SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 2.2 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.7 SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.7 SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.7 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 207 bits (506), Expect = 1e-54 Identities = 99/172 (57%), Positives = 125/172 (72%), Gaps = 3/172 (1%) Frame = +2 Query: 5 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 184 IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK+VPR Sbjct: 5 ISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPR 64 Query: 185 AC---LRRS*TYCC**GPHWHIQTVVYPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 355 + L + GP+ + + +PEQLITGKEDA+NNYARGHYT+GKE+VD V D+ Sbjct: 65 SIYVDLEPNVIDQVRTGPY---RDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDK 121 Query: 356 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 511 IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YP Sbjct: 122 IRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYP 173 Score = 98.3 bits (234), Expect = 1e-21 Identities = 50/79 (63%), Positives = 63/79 (79%), Gaps = 1/79 (1%) Frame = +1 Query: 508 PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPNLQP-N*IVS 684 PAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+ + N +++ Sbjct: 173 PAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIA 232 Query: 685 SDRLSPSINWLSLRFERAL 741 ++ SI SLRFE +L Sbjct: 233 --QVVSSIT-ASLRFEGSL 248 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 201 bits (491), Expect = 8e-53 Identities = 101/177 (57%), Positives = 127/177 (71%), Gaps = 8/177 (4%) Frame = +2 Query: 5 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAG 169 ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSETG G Sbjct: 5 ISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQG 63 Query: 170 KHVPRAC---LRRS*TYCC**GPHWHIQTVVYPEQLITGKEDAANNYARGHYTIGKEIVD 340 K VPR+ L + GP+ + + +PEQ++TGKEDA+NNYARGHYT+GKE++D Sbjct: 64 KFVPRSIYVDLEPNVIDQVRTGPY---KDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120 Query: 341 LVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 511 VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YP Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYP 177 Score = 100 bits (239), Expect = 3e-22 Identities = 43/53 (81%), Positives = 48/53 (90%) Frame = +1 Query: 508 PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPNLQ 666 PAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERP + Sbjct: 177 PAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYE 229 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 89.0 bits (211), Expect = 6e-19 Identities = 51/169 (30%), Positives = 77/169 (45%) Frame = +2 Query: 5 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 184 + + GQ G Q+G A W EHG+ G T + N +F+E GK+VPR Sbjct: 5 VHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGKYVPR 62 Query: 185 ACLRRS*TYCC**GPHWHIQTVVYPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 364 A L + P+ +I G+ A N +A+GHYT G E+ D VLD +R+ Sbjct: 63 AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRR 122 Query: 365 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 511 A+ C LQGF + H LL+ ++ +Y + F++ P Sbjct: 123 EAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAP 171 Score = 52.8 bits (121), Expect = 5e-08 Identities = 24/51 (47%), Positives = 33/51 (64%) Frame = +1 Query: 508 PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPN 660 PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+ Sbjct: 171 PAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPS 221 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 76.6 bits (180), Expect = 4e-15 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 2/171 (1%) Frame = +2 Query: 5 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 184 I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ +++PR Sbjct: 6 ITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPR 63 Query: 185 ACLRRS*TYCC**GPHWHIQTVVYPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRI 358 A L ++ PE ++ K A NN+A G Y+ + I + ++D I Sbjct: 64 AILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMI 122 Query: 359 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 511 + AD L+GF + H L+ERL+ Y KK ++++P Sbjct: 123 DREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173 Score = 35.9 bits (79), Expect = 0.006 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +1 Query: 520 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPNL-QPN*IVSS 687 VS VV+PYNS+L ++D ++DN A+ I L + P Q N +VS+ Sbjct: 178 VSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVST 234 Score = 31.5 bits (68), Expect = 0.13 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +3 Query: 180 PVHVFVDLEPTVVDEVRTGTYRQLFIQNNLLLVR 281 P + +DLEP VV+ + + TY L+ N+L+ + Sbjct: 62 PRAILIDLEPRVVNNILSDTYGSLYNPENILITK 95 >SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces pombe|chr 1|||Manual Length = 949 Score = 27.5 bits (58), Expect = 2.2 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Frame = +1 Query: 523 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI----ERPNLQPN*IVSSD 690 S+++V+ + SI + + SD F +D+ I+D+ ++DI + PN N ++++ Sbjct: 157 SSSLVDNF-SISSVPSVFFQSD--FNLDDPQIFDVVSEHIDITQTSDAPNSNRNLLLNNS 213 Query: 691 RLSPSINW 714 L I+W Sbjct: 214 MLQEKISW 221 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 25.8 bits (54), Expect = 6.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 72 STASSLMARCPQTRPSGVETILSTLSSARPELAST 176 ST SSL + ++PS T ST SSA P S+ Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 25.8 bits (54), Expect = 6.7 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +1 Query: 91 WPDAHRQDHRGWRRFFQHFLQR 156 W A R D R R FQHFLQR Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 25.8 bits (54), Expect = 6.7 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +3 Query: 351 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 518 T S + TS P+ S SSTP L S +P+T++ +LN S+P T +S Sbjct: 625 TSSTALNTSTPITSSSVLNSSTPITSSSVLNSS------TPITSSTALNTSTPITSSS 676 Score = 25.8 bits (54), Expect = 6.7 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +3 Query: 351 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 518 T S + TS P+ S SSTP L S +P+T++ +LN S+P T +S Sbjct: 1873 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSS 1924 Score = 25.8 bits (54), Expect = 6.7 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +3 Query: 351 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 518 T S + TS P+ S SSTP L S +P+T++ +LN S+P T +S Sbjct: 2065 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSS 2116 Score = 25.4 bits (53), Expect = 8.9 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = +3 Query: 351 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 518 T S TS P+ S SSTP L S +P+T++ +LN S+P T +S Sbjct: 937 TSSTGLNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSS 988 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,166,158 Number of Sequences: 5004 Number of extensions: 64824 Number of successful extensions: 244 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 237 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 363302114 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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