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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30852
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   207   1e-54
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   201   8e-53
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    89   6e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    77   4e-15
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   2.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.7  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  207 bits (506), Expect = 1e-54
 Identities = 99/172 (57%), Positives = 125/172 (72%), Gaps = 3/172 (1%)
 Frame = +2

Query: 5   ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 184
           IS+HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK+VPR
Sbjct: 5   ISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPR 64

Query: 185 AC---LRRS*TYCC**GPHWHIQTVVYPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 355
           +    L  +       GP+   + + +PEQLITGKEDA+NNYARGHYT+GKE+VD V D+
Sbjct: 65  SIYVDLEPNVIDQVRTGPY---RDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDK 121

Query: 356 IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 511
           IR++AD C+GLQGFL+FH            LL+ERL+++Y KKSKL+F++YP
Sbjct: 122 IRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYP 173



 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 50/79 (63%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
 Frame = +1

Query: 508 PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPNLQP-N*IVS 684
           PAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+ +  N +++
Sbjct: 173 PAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIA 232

Query: 685 SDRLSPSINWLSLRFERAL 741
             ++  SI   SLRFE +L
Sbjct: 233 --QVVSSIT-ASLRFEGSL 248


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  201 bits (491), Expect = 8e-53
 Identities = 101/177 (57%), Positives = 127/177 (71%), Gaps = 8/177 (4%)
 Frame = +2

Query: 5   ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAG 169
           ISVHVGQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSETG G
Sbjct: 5   ISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQG 63

Query: 170 KHVPRAC---LRRS*TYCC**GPHWHIQTVVYPEQLITGKEDAANNYARGHYTIGKEIVD 340
           K VPR+    L  +       GP+   + + +PEQ++TGKEDA+NNYARGHYT+GKE++D
Sbjct: 64  KFVPRSIYVDLEPNVIDQVRTGPY---KDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 341 LVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 511
            VL+RIR++AD C+GLQGFL+FH            LL+ERL+++YGKKS L+F++YP
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYP 177



 Score =  100 bits (239), Expect = 3e-22
 Identities = 43/53 (81%), Positives = 48/53 (90%)
 Frame = +1

Query: 508 PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPNLQ 666
           PAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERP  +
Sbjct: 177 PAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYE 229


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 51/169 (30%), Positives = 77/169 (45%)
 Frame = +2

Query: 5   ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 184
           + +  GQ G Q+G A W     EHG+   G      T     +  N +F+E   GK+VPR
Sbjct: 5   VHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGKYVPR 62

Query: 185 ACLRRS*TYCC**GPHWHIQTVVYPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRK 364
           A L                  +  P+ +I G+  A N +A+GHYT G E+ D VLD +R+
Sbjct: 63  AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRR 122

Query: 365 LADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 511
            A+ C  LQGF + H            LL+ ++  +Y  +    F++ P
Sbjct: 123 EAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAP 171



 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 24/51 (47%), Positives = 33/51 (64%)
 Frame = +1

Query: 508 PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPN 660
           PAP+ S  VVEPYN+ L+ H  +E+SD  F +DNEA+  I    L I+ P+
Sbjct: 171 PAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPS 221


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
 Frame = +2

Query: 5   ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 184
           I++  GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++   +++PR
Sbjct: 6   ITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPR 63

Query: 185 ACLRRS*TYCC**GPHWHIQTVVYPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRI 358
           A L                 ++  PE ++  K    A NN+A G Y+  + I + ++D I
Sbjct: 64  AILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMI 122

Query: 359 RKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 511
            + AD    L+GF + H             L+ERL+  Y KK    ++++P
Sbjct: 123 DREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 520 VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPNL-QPN*IVSS 687
           VS  VV+PYNS+L       ++D   ++DN A+  I    L  + P   Q N +VS+
Sbjct: 178 VSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVST 234



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 PVHVFVDLEPTVVDEVRTGTYRQLFIQNNLLLVR 281
           P  + +DLEP VV+ + + TY  L+   N+L+ +
Sbjct: 62  PRAILIDLEPRVVNNILSDTYGSLYNPENILITK 95


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = +1

Query: 523 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI----ERPNLQPN*IVSSD 690
           S+++V+ + SI +  +    SD  F +D+  I+D+   ++DI    + PN   N ++++ 
Sbjct: 157 SSSLVDNF-SISSVPSVFFQSD--FNLDDPQIFDVVSEHIDITQTSDAPNSNRNLLLNNS 213

Query: 691 RLSPSINW 714
            L   I+W
Sbjct: 214 MLQEKISW 221


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 72  STASSLMARCPQTRPSGVETILSTLSSARPELAST 176
           ST SSL +    ++PS   T  ST SSA P   S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 91  WPDAHRQDHRGWRRFFQHFLQR 156
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 351 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 518
           T S +  TS P+   S   SSTP      L S       +P+T++ +LN S+P T +S
Sbjct: 625 TSSTALNTSTPITSSSVLNSSTPITSSSVLNSS------TPITSSTALNTSTPITSSS 676



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 351  TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 518
            T S +  TS P+   S   SSTP      L S       +P+T++ +LN S+P T +S
Sbjct: 1873 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSS 1924



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 351  TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 518
            T S +  TS P+   S   SSTP      L S       +P+T++ +LN S+P T +S
Sbjct: 2065 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSS 2116



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 351  TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 518
            T S    TS P+   S   SSTP      L S       +P+T++ +LN S+P T +S
Sbjct: 937  TSSTGLNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSS 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,158
Number of Sequences: 5004
Number of extensions: 64824
Number of successful extensions: 244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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