BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30850 (861 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 29 1.1 SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 3.4 SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 6.0 >SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces pombe|chr 3|||Manual Length = 554 Score = 28.7 bits (61), Expect = 1.1 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +1 Query: 265 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLV 396 V+C F + + GF + KF A+ WAV E +LLV Sbjct: 145 VNCQSTTKFIFGELPVFNSGFSVSSSDVKFRAVQWAVGEAILLV 188 Score = 25.8 bits (54), Expect = 7.9 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = +3 Query: 525 VDILNFLINLIWLRIVVS 578 V +L+F++N+IWL I VS Sbjct: 210 VILLDFVLNMIWLPIAVS 227 >SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1064 Score = 27.1 bits (57), Expect = 3.4 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 701 SVMETYWVPENSLDIIHRRWLQ 766 +VM T+WVP+N D WL+ Sbjct: 425 NVMSTHWVPQNIRDKRFANWLK 446 >SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces pombe|chr 1|||Manual Length = 517 Score = 26.2 bits (55), Expect = 6.0 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +3 Query: 108 IQSTIKLLLWVCVVNCVQFFQLETFSQWFYTSLTCAVESNYALYVSSSLSAFGV-LCLG 281 I S + L++ +V C Q + + W YT +++SS +A LCLG Sbjct: 150 IPSLVISFLYITLVYCPQAYWTWAPNGWLYTLGALDFAGGGPVHISSGFAALAYSLCLG 208 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,995,879 Number of Sequences: 5004 Number of extensions: 89579 Number of successful extensions: 240 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 225 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 240 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 428468660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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