Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30850
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    29   1.1  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   3.4  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    26   6.0  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 265 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLV 396
           V+C     F    + +   GF    +  KF A+ WAV E +LLV
Sbjct: 145 VNCQSTTKFIFGELPVFNSGFSVSSSDVKFRAVQWAVGEAILLV 188



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 525 VDILNFLINLIWLRIVVS 578
           V +L+F++N+IWL I VS
Sbjct: 210 VILLDFVLNMIWLPIAVS 227


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 701 SVMETYWVPENSLDIIHRRWLQ 766
           +VM T+WVP+N  D     WL+
Sbjct: 425 NVMSTHWVPQNIRDKRFANWLK 446


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 108 IQSTIKLLLWVCVVNCVQFFQLETFSQWFYTSLTCAVESNYALYVSSSLSAFGV-LCLG 281
           I S +   L++ +V C Q +     + W YT           +++SS  +A    LCLG
Sbjct: 150 IPSLVISFLYITLVYCPQAYWTWAPNGWLYTLGALDFAGGGPVHISSGFAALAYSLCLG 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,995,879
Number of Sequences: 5004
Number of extensions: 89579
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)