Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30850
(861 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27) 30 2.1
SB_31254| Best HMM Match : rve (HMM E-Value=5.2e-15) 30 2.1
SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33) 30 2.1
SB_45766| Best HMM Match : F5_F8_type_C (HMM E-Value=3.1e-27) 30 2.8
SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11) 30 2.8
SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10) 29 3.7
SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6) 29 3.7
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32) 29 4.9
SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_53352| Best HMM Match : Collagen (HMM E-Value=0.11) 29 6.4
SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
Length = 611
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 710 ETYWVPENSLDIIHRRWLQLPIIQKYT 790
+ YWVP ++ + H WLQ+ ++ KYT
Sbjct: 498 QLYWVPSSASNA-HGAWLQVDLLSKYT 523
>SB_31254| Best HMM Match : rve (HMM E-Value=5.2e-15)
Length = 341
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -1
Query: 381 LHNRP----GYSAELIVINVALEAISDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNL 223
++NRP G + ++ LE +SD N R+IQ ++ ++K T+ VR+L
Sbjct: 207 MNNRPLVYQGGGRPVPILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 263
>SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33)
Length = 1485
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -1
Query: 381 LHNRP----GYSAELIVINVALEAISDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNL 223
++NRP G + ++ LE +SD N R+IQ ++ ++K T+ VR+L
Sbjct: 1344 MNNRPLVYQGGGRPVPILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 1400
>SB_45766| Best HMM Match : F5_F8_type_C (HMM E-Value=3.1e-27)
Length = 255
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 716 YWVPENSLDIIHRRWLQLPIIQKYT 790
YWVP ++ + H WLQ+ ++ KYT
Sbjct: 144 YWVPSSASNA-HGAWLQVDLLSKYT 167
>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
Length = 332
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 247 HRFLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW 369
H + + C L IA L+TVAI T C +NY FS W
Sbjct: 67 HTSPNWIICSLAIADLLVTVAIGTTEMLCTLNYCTFSCNWW 107
>SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10)
Length = 314
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 345 VINVALEAISDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNL 223
++ LE +SD N R+IQ ++ ++K T+ VR+L
Sbjct: 196 ILEEDLEKLSDAGNVTRRMRFIQHSKEDLKKRFTREYVRSL 236
>SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 345 VINVALEAISDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNL 223
++ LE +SD N R+IQ ++ ++K T+ VR+L
Sbjct: 237 ILEEDLEKLSDAGNVTRRMRFIQHSKEDLKKRFTREYVRSL 277
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +1
Query: 298 LTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLVLNLGTHGFYPFPGTFRRQYNMYVEYTS 477
LT+ F + + + S+ VV LLL++ L + + ++ +YN+Y+ +
Sbjct: 1757 LTIREAVQSFNDRIVFARNSSHACVVVLMLLLMVTLASVLVNAYVYLYKNRYNLYIWHAL 1816
Query: 478 IIAEPRCYPGISTYTWLT 531
+ YP +ST W+T
Sbjct: 1817 MPLALAIYP-MSTAAWVT 1833
>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
Length = 1119
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 818 VALSQAQCFGCISE*LVIEANGDELCPRSFQEPSK-FPLPKISK-NAVGYPK 669
V L Q+ + E +E +GD L PRS + PSK +P+ SK N+ Y K
Sbjct: 157 VPLQQSHPYTSYPEYCQVELSGDNLPPRSPRSPSKRYPIKPSSKGNSSVYGK 208
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 345 VINVALEAISDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNL 223
++ LE +SD N R+IQ ++ ++K T+ VR+L
Sbjct: 248 ILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 288
>SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32)
Length = 1027
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 345 VINVALEAISDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNL 223
++ LE +SD N R+IQ ++ ++K T+ VR+L
Sbjct: 831 ILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 871
>SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 763
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 345 VINVALEAISDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNL 223
++ LE +SD N R+IQ ++ ++K T+ VR+L
Sbjct: 603 ILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 643
>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = -3
Query: 190 HCENVSN*KNCTQFTTHTHNNSFIVDCIYKSKHTKI*LAKLFIFVNF*QEVCVVRHHHTR 11
HCE NCT+ T ++H+ + T I + + F+ ++ HH R
Sbjct: 660 HCEKCLFPSNCTRPTDNSHSGTLAAKHYKLRDTTIIVVCAILAFICIIAIAALIYRHHKR 719
Query: 10 NRF 2
+F
Sbjct: 720 QKF 722
>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1358
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 345 VINVALEAISDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNL 223
++ LE +SD N R+IQ ++ ++K T+ VR+L
Sbjct: 1198 ILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSL 1238
>SB_53352| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 348
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 213 AVESNYALYVSSSLSAFGVLCLGYSVSF--TDSCYCH*WL 326
AV+SN ++SL + C G S+ T CY H WL
Sbjct: 306 AVQSNLKRLQAASLVQYNCQCRGRDTSYPSTARCYIHYWL 345
>SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 174 ETFSQWFYTSLTCAVESNYALYVSSSLSAFGVLCLGYSVSFTDSC 308
E+ W + +T + +AL++S + FG+L +G+ SFT +C
Sbjct: 404 ESNYHWVWLLITRTLLVTFALFISLIVPHFGLL-MGFIGSFTGTC 447
>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 480 YRRAQMLSRYLHVYLVDILNFLINLIWLRIVVSYLGA 590
+R Y H + F NLIWL + +Y GA
Sbjct: 761 FRSRNFPENYNHAKFITYAMFTFNLIWLTFMGAYFGA 797
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,034,129
Number of Sequences: 59808
Number of extensions: 681063
Number of successful extensions: 1496
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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