Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30850
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    30   2.4  
AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical...    29   5.6  
Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 84  IFVC-FDLYIQSTIKLLLWVCVVNCVQFFQLETFSQWFYTSLTCAVESNYALYVSSSLSA 260
           I +C F L +Q  +  ++  C       F    F+Q     LTC  +   + Y SS  S 
Sbjct: 30  IMICLFFLLLQIFVISVVSQCPPGLTPLFSNSNFNQ----PLTCTPQDACSCYSSSGSSR 85

Query: 261 FGVLCLGYSVSFTDSCYCH 317
           FG +C  Y+ ++ +   C+
Sbjct: 86  FGTIC-QYASTYNNYICCY 103


>AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical
           protein Y47G6A.32 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 149 ELRAVLSIGNVLTMVLHVTNMCCGIKLRTICFVIAFCIWC 268
           E+RA L+   VL + + V  +C G+ + T+C  +A+C +C
Sbjct: 183 EIRAALTPFWVLAVAIGVAAICVGLNV-TLC--VAYCCYC 219


>Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical
           protein C34F6.11 protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 87  FVCFDLYIQSTIKLLLWVCVVNCVQFFQLETFSQWFYTSLTC 212
           F C+ +YI     LL +V  V C   F L  +   FYT + C
Sbjct: 59  FFCYSVYINFIFALLAFVGGVLC---FTLGLYYSTFYTRINC 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,155,539
Number of Sequences: 27780
Number of extensions: 508199
Number of successful extensions: 1281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)