Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30850
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.4  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 668 ISDNQPHSSIFSVMETYWVPENSLDIIHRRWLQLPIIQKYTQSTALG 808
           I +N+ + +  S+ ETY+V   +L+     W+       +T  T  G
Sbjct: 3   IGNNETNITNSSITETYFVSAYNLNQEDSNWIITNSFIIFTMQTGFG 49


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 227 LRTICFVIAFCIWCLVSWI*RFIY 298
           L  +  +  FCIW  V W  + +Y
Sbjct: 213 LAVVWIMCYFCIWKGVKWTGKVVY 236



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 496 CYPGISTYTWLTSS 537
           C PG   Y W T+S
Sbjct: 542 CIPGYMIYIWFTTS 555


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 227 LRTICFVIAFCIWCLVSWI*RFIY 298
           L  +  +  FCIW  V W  + +Y
Sbjct: 266 LAVVWIMCYFCIWKGVKWTGKVVY 289



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 496 CYPGISTYTWLTSS 537
           C PG   Y W T+S
Sbjct: 595 CIPGYMIYIWFTTS 608


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 237 IVRNLIPQHMLVTC-RTIVRTFPIERTARNSPHTPTIIVLLLIVY 106
           I+RN++P++++  C +    T+  +  A  +    T I    +VY
Sbjct: 190 IIRNMVPENLVQACFQQAQTTYVTKEVATGTASEITQIQEATLVY 234


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 270 RHQMQKAMTKHIVRNLIPQ 214
           +HQ Q+  T+H++    PQ
Sbjct: 423 QHQQQQQQTQHVINAQQPQ 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 276,202
Number of Sequences: 438
Number of extensions: 6706
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)