Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30850
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07690.1 68415.m00993 minichromosome maintenance family prote...    31   0.99 
At4g01110.1 68417.m00149 hypothetical protein                          30   1.7  
At5g51340.1 68418.m06366 expressed protein                             30   2.3  
At1g67855.1 68414.m07747 hypothetical protein hypothetical protein     30   2.3  
At4g15290.1 68417.m02341 cellulose synthase family protein simil...    29   3.0  
At2g07777.1 68415.m00893 expressed protein                             28   7.0  
At3g47250.3 68416.m05132 expressed protein contains Pfam profile...    28   9.2  
At3g47250.2 68416.m05131 expressed protein contains Pfam profile...    28   9.2  
At3g47250.1 68416.m05130 expressed protein contains Pfam profile...    28   9.2  
At2g32620.1 68415.m03982 cellulose synthase family protein simil...    28   9.2  
At2g32530.1 68415.m03974 cellulose synthase family protein simil...    28   9.2  

>At2g07690.1 68415.m00993 minichromosome maintenance family protein
           / MCM family protein similar to SP|P55862 DNA
           replication licensing factor MCM5 (CDC46 homolog)
           {Xenopus laevis}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 727

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 29/103 (28%), Positives = 45/103 (43%)
 Frame = -1

Query: 318 SDNSNCQ*MKRYIQDTRHQMQKAMTKHIVRNLIPQHMLVTCRTIVRTFPIERTARNSPHT 139
           +D+     +KRYIQ  R +    ++K    NL  Q   VT R  ++    E T   +P  
Sbjct: 546 TDSKEDNWLKRYIQYCRARCHPRLSKDAAENL--QRKYVTIRMDMKRRAHE-TGEAAPIP 602

Query: 138 PTIIVLLLIVYTNRSTQKFN*PNYLFS*IFNRKFALFDTTTRE 10
            T+  L  IV  + S  K    +       ++ F LFDT+T +
Sbjct: 603 ITVRQLEAIVRLSESLAKMRLSHEATPDDVDKAFKLFDTSTMD 645


>At4g01110.1 68417.m00149 hypothetical protein
          Length = 265

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +2

Query: 92  VLRFVYTINNKTIIVGVCGELRAVLSIGNVLTMVLHVTNMCCGIKLRTICFVIAFCIWCL 271
           V R    + +K ++V V  + +  L +G    + + VT  C G++L+T+   ++ C   +
Sbjct: 194 VKRLRADMKSKKLVVKVMAKTKVGLGVGRRKIVTVGVTISCGGVRLQTLDSKMSKCTIKM 253

Query: 272 VSW 280
           + W
Sbjct: 254 LKW 256


>At5g51340.1 68418.m06366 expressed protein 
          Length = 726

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 238 MFRHRFLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVV 378
           M R ++ H V C  + AFH +    +T+      +   F+A+ +  +
Sbjct: 455 MLRGQYSHSVGCYSEAAFHCIEATKLTESISMQASCQAFAAVSYLTI 501


>At1g67855.1 68414.m07747 hypothetical protein hypothetical protein
          Length = 96

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 282 IQDTRHQMQKAMTKHIVRNLIPQHMLVT 199
           ++ + H M+K  T+ I R ++ QHM+VT
Sbjct: 20  MKTSSHHMRKVKTRGITRKVLDQHMIVT 47


>At4g15290.1 68417.m02341 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 757

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +3

Query: 471 HIDYRRAQMLSRYLHVYLVDILNFLINLIWLRIVVSY-LGA---LYKRNPEPMRMFLSLS 638
           H+ Y   +    YLH Y    +NFL+ +  L     Y L     +Y   P+ +R  + + 
Sbjct: 253 HLVYISREKRPNYLHHYKTGAMNFLLRVSGLMTNAPYTLNVDCDMYANEPDVVRQAMCVF 312

Query: 639 IVKGRDANH 665
           +   +++NH
Sbjct: 313 LQNSKNSNH 321


>At2g07777.1 68415.m00893 expressed protein
          Length = 262

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 120 IKLLLWVCVVNCVQFFQLETFSQWFYTSLTCAVESNYALYVSSSLSAFG 266
           I L+  +C+   ++ +  +  +QW Y +L C +     L  S  L+ FG
Sbjct: 38  ILLVFSICLFRSLKQYLGKRMTQWCYLALVCQISLFLVLLRSHILAGFG 86


>At3g47250.3 68416.m05132 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 274 VLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 399
           +LD  F L+ + IV+     D+N D    IPW  A ++  LL+L
Sbjct: 154 ILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197


>At3g47250.2 68416.m05131 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 274 VLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 399
           +LD  F L+ + IV+     D+N D    IPW  A ++  LL+L
Sbjct: 154 ILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197


>At3g47250.1 68416.m05130 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 274 VLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 399
           +LD  F L+ + IV+     D+N D    IPW  A ++  LL+L
Sbjct: 154 ILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197


>At2g32620.1 68415.m03982 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880], -9 [gi:9622890]
          Length = 757

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = +3

Query: 471 HIDYRRAQMLSRYLHVYLVDILNFLINLIWLRIVVSYL----GALYKRNPEPMRMFLSLS 638
           HI Y   +    YLH Y    +NFL  +  L     Y+      +Y    + +R  + + 
Sbjct: 253 HIVYISREKRPNYLHHYKAGAMNFLARVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIF 312

Query: 639 IVKGRDANH 665
           + K ++ NH
Sbjct: 313 LQKSQNQNH 321


>At2g32530.1 68415.m03974 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = +3

Query: 471 HIDYRRAQMLSRYLHVYLVDILNFLINLIWLRIVVSYL----GALYKRNPEPMRMFLSLS 638
           H  Y   +    YLH Y    +NFL+ +  L     Y+      +Y    + +R  + + 
Sbjct: 253 HFVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIF 312

Query: 639 IVKGRDANH 665
           + K  ++NH
Sbjct: 313 LQKSMNSNH 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,738,812
Number of Sequences: 28952
Number of extensions: 462404
Number of successful extensions: 1169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)