Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30847
         (815 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D314 Cluster: Chromosome undetermined scaffold_36, wh...    37   0.53 
UniRef50_Q33564 Cluster: CR4 protein; n=1; Trypanosoma brucei|Re...    37   0.70 

>UniRef50_A0D314 Cluster: Chromosome undetermined scaffold_36, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_36,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 460

 Score = 37.1 bits (82), Expect = 0.53
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +3

Query: 222 KNKSCNKHFFFNIVWALLLSISQIIITGTNFVFSINNGIYHIKISC*HIFYTQLNTHCRY 401
           K K    HF   ++W  L+ +    + G N +   NNGIYH  I C ++F TQ + H + 
Sbjct: 101 KKKGFGFHFDEQLIWNYLIEM----LVGLNELH--NNGIYHRDIKCANVFLTQDHKHIKL 154

Query: 402 QD 407
            D
Sbjct: 155 GD 156


>UniRef50_Q33564 Cluster: CR4 protein; n=1; Trypanosoma brucei|Rep:
           CR4 protein - Trypanosoma brucei
          Length = 146

 Score = 36.7 bits (81), Expect = 0.70
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 221 LLIFCFYFY*TVCVRSKVLVLQTCIFHKVVVGITFIMV 108
           LL+FCF F   VCV    L   +C+F  VV+G  F++V
Sbjct: 8   LLLFCFLFLLFVCVGMFYLFCYSCLFFFVVLGCDFLLV 45


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,937,781
Number of Sequences: 1657284
Number of extensions: 15588595
Number of successful extensions: 33945
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33924
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)