BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30847 (815 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 28 1.8 SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 26 5.6 SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 9.7 >SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1057 Score = 27.9 bits (59), Expect = 1.8 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = +3 Query: 54 CLISSAASQYRNIVCTQLYHDEGYTHNYFVKYAGLQYQHL*SNTNSLIKIKTE 212 CLI S S + + VCT + H EG + K G YQ N ++ +K+K E Sbjct: 613 CLIVSHDSSFLDHVCTDIIHYEGVKNQ--AKKLG-YYQ---GNLSAFVKVKPE 659 >SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharomyces pombe|chr 2|||Manual Length = 429 Score = 26.2 bits (55), Expect = 5.6 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +3 Query: 117 EGYTHNYFVKYAGLQYQHL*SNTNSLIKIKTENQKKNKSCNKHF 248 E + +++ V Y L+ N+ + KT+N K +KS HF Sbjct: 348 EAFYYDHIVSYYMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHF 391 >SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 25.4 bits (53), Expect = 9.7 Identities = 9/33 (27%), Positives = 15/33 (45%) Frame = -2 Query: 595 RPVFVFICPLFYMCMFQTFRILIGYFHNFDASH 497 RP+F + C+ ++ L FH D+ H Sbjct: 357 RPLFTIVESQILPCVLHSYETLTNVFHRDDSKH 389 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,391,488 Number of Sequences: 5004 Number of extensions: 69970 Number of successful extensions: 159 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 153 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 159 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 398435810 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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