Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30847
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    28   1.8  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   5.6  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 54  CLISSAASQYRNIVCTQLYHDEGYTHNYFVKYAGLQYQHL*SNTNSLIKIKTE 212
           CLI S  S + + VCT + H EG  +    K  G  YQ    N ++ +K+K E
Sbjct: 613 CLIVSHDSSFLDHVCTDIIHYEGVKNQ--AKKLG-YYQ---GNLSAFVKVKPE 659


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 117 EGYTHNYFVKYAGLQYQHL*SNTNSLIKIKTENQKKNKSCNKHF 248
           E + +++ V Y  L+        N+ +  KT+N K +KS   HF
Sbjct: 348 EAFYYDHIVSYYMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHF 391


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -2

Query: 595 RPVFVFICPLFYMCMFQTFRILIGYFHNFDASH 497
           RP+F  +      C+  ++  L   FH  D+ H
Sbjct: 357 RPLFTIVESQILPCVLHSYETLTNVFHRDDSKH 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,488
Number of Sequences: 5004
Number of extensions: 69970
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)