Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30847
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)              33   0.37 
SB_48131| Best HMM Match : CLN3 (HMM E-Value=6.7e-06)                  28   7.9  
SB_35725| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
          Length = 1173

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 580 FICPLFYMCMFQTFRILIGYFHNFDASHQTLAKIKKIVLTLN 455
           F CP +Y+C  +TF +  GY+  ++ SH+ L + +     LN
Sbjct: 255 FPCPTYYICSNETFTLAPGYYWEWE-SHKHLEQFESFRWNLN 295


>SB_48131| Best HMM Match : CLN3 (HMM E-Value=6.7e-06)
          Length = 300

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 635 LIINSG*HFLC*SLGPDITQ--PYFPSLVGLGILELKGIPWLVI 760
           L+ N G +FL   + P   Q  PYFP ++ +  LE+ G+  +V+
Sbjct: 76  LVANIGPYFLVTLVAPYFIQKVPYFPRVLAIFTLEVAGLIMVVV 119


>SB_35725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +3

Query: 141 VKYAGLQYQHL*SNTNSLIKIKTENQKKNKSCNKHFFFNIVWALLLSISQIIITGTNFVF 320
           +KY+GL+ QHL +N+  L  ++      N S   HF  N+ +     + +  +T T FV+
Sbjct: 48  IKYSGLEAQHLSANSKVLPPMQ-RGIWNNFSTRAHFAQNVKFVSARIVDR-PLTDTGFVY 105

Query: 321 SI 326
            +
Sbjct: 106 FV 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,544,044
Number of Sequences: 59808
Number of extensions: 493036
Number of successful extensions: 909
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)