Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30846
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 30 2.9
03_05_0576 + 25765137-25766420 29 3.8
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 29 5.0
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 29 6.6
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 6.6
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501... 29 6.6
04_04_1459 + 33758891-33758954,33759101-33759327,33759916-337599... 28 8.7
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 28 8.7
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 1 ASFGDHNE-VHGYFGGIVGRGCLCQGG 78
A +H++ + GYF I+G CLC GG
Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDGG 273
>03_05_0576 + 25765137-25766420
Length = 427
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 95 ASVCLSPPWQRQPRPTMPP 39
A+V +SPP Q +PRP +PP
Sbjct: 97 AAVSVSPPTQPRPRPELPP 115
>01_06_1699 -
39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 65 FAKEE-KGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241
F KEE +G P +S +TK SMT ME E + + +++ TK + +K
Sbjct: 503 FIKEEHQGKPSRSDNNTRTKDLSMT-GAME---IEPGVYGWEIDNSLKKTKFMLKIDRKL 558
Query: 242 TISEGK 259
+IS+G+
Sbjct: 559 SISKGQ 564
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 158 ISEVAMKATAVTKAMEGTKVSASVTKKDTISEGK 259
++++ K VT + GT VSAS + I+EGK
Sbjct: 1361 LNKIVSKPEVVTSEVTGTTVSASTSSSVPITEGK 1394
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 399 PSLPPQQF*CARGVHDDRGGSRLRWQL 319
P LPP+ C VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270
>05_03_0470 +
14448243-14448482,14448568-14449181,14449508-14450135,
14450217-14450827,14450911-14451162,14451243-14451353,
14451441-14451501,14451603-14451695,14451773-14451940
Length = 925
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 71 KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241
KE + P++SKR+ K K S D+ + ++ A+TK +G + SV +KD
Sbjct: 78 KEGETAPRRSKRQPKKKVPSKDDDVPANTTGTKKIERLAITKKRKGER---SVNRKD 131
>04_04_1459 +
33758891-33758954,33759101-33759327,33759916-33759966,
33760265-33760313,33760738-33761018
Length = 223
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 58 GCLCQGGERHTEAVEEKKQDKRG 126
G LC GGE A EEKK+ ++G
Sbjct: 143 GGLCVGGELQVRAEEEKKEVRKG 165
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 71 KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241
KE + TP +SKR+ K K S D+ + + +A+TK +G + SV +KD
Sbjct: 78 KEGETTPWRSKRQPKKKVPSKDDDVPANTTGTKNSERSAITKKRKGER---SVNRKD 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,474,729
Number of Sequences: 37544
Number of extensions: 404308
Number of successful extensions: 1049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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