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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30846
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    30   2.9  
03_05_0576 + 25765137-25766420                                         29   3.8  
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700...    29   5.0  
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    29   6.6  
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    29   6.6  
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501...    29   6.6  
04_04_1459 + 33758891-33758954,33759101-33759327,33759916-337599...    28   8.7  
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802...    28   8.7  

>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 1   ASFGDHNE-VHGYFGGIVGRGCLCQGG 78
           A   +H++ + GYF  I+G  CLC GG
Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDGG 273


>03_05_0576 + 25765137-25766420
          Length = 427

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 95  ASVCLSPPWQRQPRPTMPP 39
           A+V +SPP Q +PRP +PP
Sbjct: 97  AAVSVSPPTQPRPRPELPP 115


>01_06_1699 -
           39269477-39269574,39269690-39269929,39270029-39270092,
           39270251-39270771,39271032-39271326,39271400-39271564,
           39271650-39272237,39272617-39272703,39272982-39274429,
           39274515-39275015,39275574-39275678,39276095-39276143
          Length = 1386

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 65  FAKEE-KGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241
           F KEE +G P +S    +TK  SMT   ME    E  +    +  +++ TK    + +K 
Sbjct: 503 FIKEEHQGKPSRSDNNTRTKDLSMT-GAME---IEPGVYGWEIDNSLKKTKFMLKIDRKL 558

Query: 242 TISEGK 259
           +IS+G+
Sbjct: 559 SISKGQ 564


>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
            29039684-29039741,29039829-29039905,29040004-29040214,
            29040339-29040386,29042496-29042608,29043270-29043341,
            29044372-29046336,29046434-29046641,29046847-29047165,
            29047813-29047937,29048024-29048157,29049089-29049164,
            29049276-29049428,29049829-29050532,29050636-29050811,
            29050945-29051107,29051199-29051341,29051802-29051914,
            29053113-29053237,29053867-29054016,29054753-29054921,
            29055201-29055418,29055499-29055709
          Length = 2135

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 158  ISEVAMKATAVTKAMEGTKVSASVTKKDTISEGK 259
            ++++  K   VT  + GT VSAS +    I+EGK
Sbjct: 1361 LNKIVSKPEVVTSEVTGTTVSASTSSSVPITEGK 1394


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 399 PSLPPQQF*CARGVHDDRGGSRLRWQL 319
           P LPP+   C   VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270


>05_03_0470 +
           14448243-14448482,14448568-14449181,14449508-14450135,
           14450217-14450827,14450911-14451162,14451243-14451353,
           14451441-14451501,14451603-14451695,14451773-14451940
          Length = 925

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 71  KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241
           KE +  P++SKR+ K K  S   D+  +      ++  A+TK  +G +   SV +KD
Sbjct: 78  KEGETAPRRSKRQPKKKVPSKDDDVPANTTGTKKIERLAITKKRKGER---SVNRKD 131


>04_04_1459 +
           33758891-33758954,33759101-33759327,33759916-33759966,
           33760265-33760313,33760738-33761018
          Length = 223

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 58  GCLCQGGERHTEAVEEKKQDKRG 126
           G LC GGE    A EEKK+ ++G
Sbjct: 143 GGLCVGGELQVRAEEEKKEVRKG 165


>02_02_0223 -
           8021040-8021247,8022275-8022367,8022808-8023059,
           8023143-8023597,8023667-8023983,8024019-8024298,
           8024423-8024728,8024762-8025130,8025216-8025455
          Length = 839

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 71  KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241
           KE + TP +SKR+ K K  S   D+  +       + +A+TK  +G +   SV +KD
Sbjct: 78  KEGETTPWRSKRQPKKKVPSKDDDVPANTTGTKNSERSAITKKRKGER---SVNRKD 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,474,729
Number of Sequences: 37544
Number of extensions: 404308
Number of successful extensions: 1049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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