BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30846 (895 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 30 2.9 03_05_0576 + 25765137-25766420 29 3.8 01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 29 5.0 07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 29 6.6 06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 6.6 05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501... 29 6.6 04_04_1459 + 33758891-33758954,33759101-33759327,33759916-337599... 28 8.7 02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 28 8.7 >04_03_0286 + 13915705-13915984,13916478-13917062,13918188-13918661, 13918963-13920208,13920282-13920297 Length = 866 Score = 29.9 bits (64), Expect = 2.9 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = +1 Query: 1 ASFGDHNE-VHGYFGGIVGRGCLCQGG 78 A +H++ + GYF I+G CLC GG Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDGG 273 >03_05_0576 + 25765137-25766420 Length = 427 Score = 29.5 bits (63), Expect = 3.8 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -3 Query: 95 ASVCLSPPWQRQPRPTMPP 39 A+V +SPP Q +PRP +PP Sbjct: 97 AAVSVSPPTQPRPRPELPP 115 >01_06_1699 - 39269477-39269574,39269690-39269929,39270029-39270092, 39270251-39270771,39271032-39271326,39271400-39271564, 39271650-39272237,39272617-39272703,39272982-39274429, 39274515-39275015,39275574-39275678,39276095-39276143 Length = 1386 Score = 29.1 bits (62), Expect = 5.0 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 65 FAKEE-KGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241 F KEE +G P +S +TK SMT ME E + + +++ TK + +K Sbjct: 503 FIKEEHQGKPSRSDNNTRTKDLSMT-GAME---IEPGVYGWEIDNSLKKTKFMLKIDRKL 558 Query: 242 TISEGK 259 +IS+G+ Sbjct: 559 SISKGQ 564 >07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594, 29039684-29039741,29039829-29039905,29040004-29040214, 29040339-29040386,29042496-29042608,29043270-29043341, 29044372-29046336,29046434-29046641,29046847-29047165, 29047813-29047937,29048024-29048157,29049089-29049164, 29049276-29049428,29049829-29050532,29050636-29050811, 29050945-29051107,29051199-29051341,29051802-29051914, 29053113-29053237,29053867-29054016,29054753-29054921, 29055201-29055418,29055499-29055709 Length = 2135 Score = 28.7 bits (61), Expect = 6.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 158 ISEVAMKATAVTKAMEGTKVSASVTKKDTISEGK 259 ++++ K VT + GT VSAS + I+EGK Sbjct: 1361 LNKIVSKPEVVTSEVTGTTVSASTSSSVPITEGK 1394 >06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905, 5819969-5820064,5820147-5820266,5820401-5820663, 5821507-5821617 Length = 363 Score = 28.7 bits (61), Expect = 6.6 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 Query: 399 PSLPPQQF*CARGVHDDRGGSRLRWQL 319 P LPP+ C VH D GG+ +RW L Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270 >05_03_0470 + 14448243-14448482,14448568-14449181,14449508-14450135, 14450217-14450827,14450911-14451162,14451243-14451353, 14451441-14451501,14451603-14451695,14451773-14451940 Length = 925 Score = 28.7 bits (61), Expect = 6.6 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +2 Query: 71 KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241 KE + P++SKR+ K K S D+ + ++ A+TK +G + SV +KD Sbjct: 78 KEGETAPRRSKRQPKKKVPSKDDDVPANTTGTKKIERLAITKKRKGER---SVNRKD 131 >04_04_1459 + 33758891-33758954,33759101-33759327,33759916-33759966, 33760265-33760313,33760738-33761018 Length = 223 Score = 28.3 bits (60), Expect = 8.7 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1 Query: 58 GCLCQGGERHTEAVEEKKQDKRG 126 G LC GGE A EEKK+ ++G Sbjct: 143 GGLCVGGELQVRAEEEKKEVRKG 165 >02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059, 8023143-8023597,8023667-8023983,8024019-8024298, 8024423-8024728,8024762-8025130,8025216-8025455 Length = 839 Score = 28.3 bits (60), Expect = 8.7 Identities = 19/57 (33%), Positives = 30/57 (52%) Frame = +2 Query: 71 KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241 KE + TP +SKR+ K K S D+ + + +A+TK +G + SV +KD Sbjct: 78 KEGETTPWRSKRQPKKKVPSKDDDVPANTTGTKNSERSAITKKRKGER---SVNRKD 131 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,474,729 Number of Sequences: 37544 Number of extensions: 404308 Number of successful extensions: 1049 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1014 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1049 length of database: 14,793,348 effective HSP length: 82 effective length of database: 11,714,740 effective search space used: 2518669100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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