BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30846 (895 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF402000-1|AAM73764.1| 2542|Homo sapiens talin 2 protein. 31 5.6 AB002318-1|BAA20778.2| 1933|Homo sapiens KIAA0320 protein. 31 5.6 X61499-1|CAA43716.1| 415|Homo sapiens NF-kB subunit protein. 30 9.9 >AF402000-1|AAM73764.1| 2542|Homo sapiens talin 2 protein. Length = 2542 Score = 31.1 bits (67), Expect = 5.6 Identities = 27/82 (32%), Positives = 42/82 (51%) Frame = +2 Query: 14 TTMKYTVILVASLAVVAFAKEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVT 193 T + T +L A+ ++ A AK+ + Q K R K K A T D E I+ E A A T Sbjct: 2303 TVIAETELLGAAASIEAAAKKLE----QLKPRAKPKQADETLDFEEQIL-EAAKSIAAAT 2357 Query: 194 KAMEGTKVSASVTKKDTISEGK 259 A+ SAS +++ +++GK Sbjct: 2358 SALVK---SASAAQRELVAQGK 2376 >AB002318-1|BAA20778.2| 1933|Homo sapiens KIAA0320 protein. Length = 1933 Score = 31.1 bits (67), Expect = 5.6 Identities = 27/82 (32%), Positives = 42/82 (51%) Frame = +2 Query: 14 TTMKYTVILVASLAVVAFAKEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVT 193 T + T +L A+ ++ A AK+ + Q K R K K A T D E I+ E A A T Sbjct: 1694 TVIAETELLGAAASIEAAAKKLE----QLKPRAKPKQADETLDFEEQIL-EAAKSIAAAT 1748 Query: 194 KAMEGTKVSASVTKKDTISEGK 259 A+ SAS +++ +++GK Sbjct: 1749 SALVK---SASAAQRELVAQGK 1767 >X61499-1|CAA43716.1| 415|Homo sapiens NF-kB subunit protein. Length = 415 Score = 30.3 bits (65), Expect = 9.9 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +1 Query: 10 GDHNEVHGYFGGIVGRGCLCQGGERHTEAVEEKKQDKRG 126 G GY G G G L +GG + EAVEEK + G Sbjct: 359 GSGGAAGGYGGAGGGEGVLMEGGVKVREAVEEKNLGEAG 397 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 109,417,006 Number of Sequences: 237096 Number of extensions: 2165761 Number of successful extensions: 4212 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4212 length of database: 76,859,062 effective HSP length: 90 effective length of database: 55,520,422 effective search space used: 11492727354 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -