Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30846
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.40 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 740  FHWKLGPFFSNSVGLGKRALSLHKG 666
            FH+ + PF SN   L  R LS+ KG
Sbjct: 1034 FHYSVVPFVSNHDILNLRPLSMEKG 1058


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 776 MTSYGWGTFNS*FHWKLG 723
           M SYGW T +  F WK G
Sbjct: 178 MASYGWTTDDLVFLWKEG 195


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 776 MTSYGWGTFNS*FHWKLG 723
           M SYGW T +  F WK G
Sbjct: 178 MASYGWTTDDLVFLWKEG 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,706
Number of Sequences: 438
Number of extensions: 4137
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)