Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30846
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ...    30   2.4  
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ...    30   2.4  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    30   2.4  
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si...    29   4.2  
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]...    28   9.6  
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR...    28   9.6  

>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative strong similarity to
           Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
           sativus] GI:1542941; contains InterPro accession
           IPR002155: Thiolase
          Length = 403

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 488 GLRYGHFHLIGYFLLDGIGDVFLDC 414
           G R+GH  L+   L DG+ DV+ DC
Sbjct: 140 GSRFGHDSLVDGMLKDGLWDVYNDC 164


>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative strong similarity to
           Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
           sativus] GI:1542941; contains InterPro accession
           IPR002155: Thiolase
          Length = 398

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 488 GLRYGHFHLIGYFLLDGIGDVFLDC 414
           G R+GH  L+   L DG+ DV+ DC
Sbjct: 135 GSRFGHDSLVDGMLKDGLWDVYNDC 159


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 62  AFAKEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTK 235
           AF+KE  G  +Q K   K K  S T D + +++SE+  +  +    +EG  V    T+
Sbjct: 109 AFSKE--GLGQQPKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTR 164


>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
           similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
           3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
           domain
          Length = 1113

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 703 TLFEKKGPSFQ*NY--ELKVPQPYEVI*ENCLTESKYPVRQGPNN 831
           TL  KK  + + NY  E ++PQ Y  +   C+ +   PV  GP+N
Sbjct: 835 TLLLKKANNNKVNYKSENRMPQYYPPMASACIADDDNPVTSGPSN 879


>At3g44670.1 68416.m04804 disease resistance protein
           RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
           signature TIR-NBS-LRR exists, suggestive of a disease
           resistance protein. Closest Col-0 homolog to both RPP1
           Ws-A and RPP1 Ws-C
          Length = 872

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 392 KEGACSVYSRETRPLYRREESTL*GESARTSA 487
           K G C +  RETR L R     L  ES+R S+
Sbjct: 787 KIGECGILQRETRSLRRSSSPDLSPESSRVSS 818


>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1194

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 392  KEGACSVYSRETRPLYRREESTL*GESARTSA 487
            K G C +  RETR L R     L  ES+R S+
Sbjct: 1155 KIGECGILQRETRSLRRSSSPDLSPESSRVSS 1186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,210,275
Number of Sequences: 28952
Number of extensions: 316155
Number of successful extensions: 793
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)