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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30845
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot...   139   5e-32
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo...   123   5e-27
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo...   103   5e-21
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;...    93   4e-18
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol...    89   9e-17
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ...    87   5e-16
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c...    86   9e-16
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti...    80   4e-14
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL...    79   1e-13
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu...    73   7e-12
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E...    73   9e-12
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n...    69   8e-11
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich...    66   8e-10
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w...    64   2e-09
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli...    60   4e-08
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal...    57   5e-07
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ...    54   2e-06
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ...    50   4e-05
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b...    50   7e-05
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ...    49   1e-04
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org...    46   7e-04
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu...    44   0.005
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc...    43   0.006
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo...    38   0.23 
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc...    38   0.23 
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea...    36   0.71 
UniRef50_A6GVL2 Cluster: Putative cell surface protein SprD; n=1...    35   1.6  
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar...    35   1.6  
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ...    34   2.9  
UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr prote...    34   3.8  
UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotei...    34   3.8  
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea...    33   5.0  
UniRef50_Q6AIU3 Cluster: Probable RNAse E; n=1; Desulfotalea psy...    33   6.6  
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop...    33   6.6  
UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia i...    33   8.7  
UniRef50_Q6BZN9 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    33   8.7  

>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
           Endopterygota|Rep: Ribosomal protein 23 - Lonomia
           obliqua (Moth)
          Length = 274

 Score =  139 bits (337), Expect = 5e-32
 Identities = 62/84 (73%), Positives = 70/84 (83%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           +NKDQGLTR+FRNIPGV+            APGGH+GRF+IWTQSAF RLD +FGSWKTP
Sbjct: 76  YNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFERLDAIFGSWKTP 135

Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
           SK+KKNFNLPQPKMANTDL+RLLK
Sbjct: 136 SKEKKNFNLPQPKMANTDLSRLLK 159



 Score =  110 bits (265), Expect = 3e-23
 Identities = 54/76 (71%), Positives = 65/76 (85%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
           +EIR+VLRAP KRV+RATRKLNPLTN KAMLKLNPYAAVLK+KA+L+  +RKN +AL  A
Sbjct: 161 EEIRRVLRAPIKRVVRATRKLNPLTNTKAMLKLNPYAAVLKKKAVLDQVKRKNKRALEVA 220

Query: 436 EKSGLKLSKRNPAMKA 483
           EK G+KL   +PA+KA
Sbjct: 221 EKRGIKLPDDDPAVKA 236


>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
           Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
           melanogaster (Fruit fly)
          Length = 401

 Score =  123 bits (296), Expect = 5e-27
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           ++KD+GL +AFRNIPG+E            APGGH+GRFVIWT+SAF RL+ LFG+WK P
Sbjct: 214 YDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKP 273

Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
           S  KK +NLPQPKMANTDL+RLLK
Sbjct: 274 STLKKGYNLPQPKMANTDLSRLLK 297



 Score = 81.8 bits (193), Expect = 1e-14
 Identities = 39/69 (56%), Positives = 51/69 (73%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
           +EIRKVLR P KRV R+ R+LNPLTN + ++KLNPYA VLKR+A L   +R   K LA A
Sbjct: 299 EEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKA 358

Query: 436 EKSGLKLSK 462
           +K  ++L+K
Sbjct: 359 KKQNVELAK 367


>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
           Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
           (Human)
          Length = 427

 Score =  103 bits (246), Expect = 5e-21
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           +N+D G+ +AFRNIPG+             APGGH+GRF IWT+SAF +LD L+G+W+  
Sbjct: 211 YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKA 270

Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
           +  K N+NLP  KM NTDL+R+LK
Sbjct: 271 ASLKSNYNLPMHKMINTDLSRILK 294



 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +1

Query: 259 EIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 420
           EI++ LRAP K++ R   K NPL N + MLKLNPYA  ++R  IL   R   L+
Sbjct: 297 EIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350


>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
           Ostreococcus tauri|Rep: Ribosomal protein
           RPL1/RPL2/RL4L4 - Ostreococcus tauri
          Length = 404

 Score = 93.5 bits (222), Expect = 4e-18
 Identities = 43/83 (51%), Positives = 56/83 (67%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           +++D G+TRAFRNIPGVE            APGGH+GRF+IWT+SAF +LD +FG+  + 
Sbjct: 214 YSEDNGVTRAFRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSAFEKLDSIFGTSTSK 273

Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
           S  KK +  P   MA TDLTRL+
Sbjct: 274 SASKKGWKPPTNIMAQTDLTRLI 296



 Score = 43.6 bits (98), Expect = 0.005
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKL--NPLTNNKAMLKLNPYAAVLKR-KAILELRRRKNLKAL 426
           DEI+  L AP    IRA   L  NPL N  AM KLNPYA V +  +A  +  R K   A 
Sbjct: 299 DEIQSALNAPKLGAIRAHAPLKRNPLKNKSAMDKLNPYAKVAREMQARAQEERSKAKAAK 358

Query: 427 ADAEKSGL 450
           ++A +S +
Sbjct: 359 SNAARSAV 366


>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
           Oligohymenophorea|Rep: Ribosomal protein L4, putative -
           Paramecium tetraurelia
          Length = 406

 Score = 89.0 bits (211), Expect = 9e-17
 Identities = 45/103 (43%), Positives = 58/103 (56%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           FN++  L +AFRN+PGVE            APGG LGRFVIWTQSAF  LD LFG+++  
Sbjct: 213 FNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFAHLDKLFGTYRYA 272

Query: 182 SKQKKNFNLPQPKMANTDLTRLLKLMRSGRSSVLPTNA*SVLH 310
           S  K  + L +P + N DL R++      +  V P     VLH
Sbjct: 273 SVLKDGYQLLRPLLTNPDLARIIN-SNQVQEKVQPAKTTKVLH 314



 Score = 41.1 bits (92), Expect = 0.025
 Identities = 29/79 (36%), Positives = 40/79 (50%)
 Frame = +1

Query: 244 SSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA 423
           S+QV E  KV  A   +V+   +K NPL N KAM +LNPYA   +  A+  ++       
Sbjct: 297 SNQVQE--KVQPAKTTKVLHDVQKKNPLKNTKAMDRLNPYAKKQRAAAVAAIK------- 347

Query: 424 LADAEKSGLKLSKRNPAMK 480
              A   G K  K+N A+K
Sbjct: 348 ---ANTKGTKKIKKNKALK 363


>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 349

 Score = 86.6 bits (205), Expect = 5e-16
 Identities = 39/77 (50%), Positives = 49/77 (63%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
           L +AFRNIPGVE            APGGHLGRF++WT SAFG LD ++GS   PS  KK+
Sbjct: 199 LVKAFRNIPGVETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGALDTIYGSTTEPSALKKD 258

Query: 200 FNLPQPKMANTDLTRLL 250
           F LP   M   DL++++
Sbjct: 259 FLLPSTMMKQPDLSKII 275



 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
 Frame = +1

Query: 259 EIRKVLR-----APNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 390
           +I+KVLR     A +KR +   +K NPL N +  L+LNPYAA   ++ +
Sbjct: 279 DIQKVLRPVRGGAVSKRGV--VQKKNPLKNFQVQLRLNPYAATFSKEKL 325


>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
           caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
          Length = 252

 Score = 85.8 bits (203), Expect = 9e-16
 Identities = 40/83 (48%), Positives = 52/83 (62%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           FN++  L +AFRN+PGVE            APGG LGRFVIWTQSAF  LD LFG+++  
Sbjct: 59  FNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFANLDKLFGTYRYS 118

Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
           S  K  + L +P + N DL R++
Sbjct: 119 SILKDGYQLLRPLLTNPDLARII 141



 Score = 40.7 bits (91), Expect = 0.033
 Identities = 29/81 (35%), Positives = 41/81 (50%)
 Frame = +1

Query: 244 SSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA 423
           S+QV E  KV  A    V+   +K NPL N+KA+ +LNPYA           ++R    A
Sbjct: 143 SNQVQE--KVQAAKQTTVLHEVQKKNPLKNSKALDRLNPYAK----------KQRAAATA 190

Query: 424 LADAEKSGLKLSKRNPAMKAE 486
              A  +G K  K+N A+K +
Sbjct: 191 AVKAHTTGTKKIKKNKALKKQ 211


>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
           Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
           Sclerotinia sclerotiorum 1980
          Length = 373

 Score = 80.2 bits (189), Expect = 4e-14
 Identities = 37/77 (48%), Positives = 48/77 (62%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
           L RAFRN+PGVE            APGGHLGRF+IW+ SAF  LD ++G+   PS  KK+
Sbjct: 222 LVRAFRNLPGVETCDVYSLNLLQLAPGGHLGRFIIWSSSAFKALDNIYGTTTAPSALKKD 281

Query: 200 FNLPQPKMANTDLTRLL 250
           F LP   ++  D+ RL+
Sbjct: 282 FLLPSNVVSQADIGRLI 298



 Score = 34.3 bits (75), Expect = 2.9
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +1

Query: 259 EIRKVLRAPNKRVI--RA-TRKLNPLTNNKAMLKLNPYAAVLKRKAI 390
           E++ V+RA     +  RA  +K NPL N + +L+LNPYAA   ++ I
Sbjct: 302 ELQSVIRAAKGSALTKRAGVQKKNPLLNKQVLLRLNPYAAGYSKEKI 348


>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
           Streblomastix strix
          Length = 492

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 35/82 (42%), Positives = 52/82 (63%)
 Frame = +2

Query: 5   NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 184
           ++++GL  AFRNI GV+            APGGHLGRF+IWT+ A+ +LD L+G+    +
Sbjct: 212 DQNEGLANAFRNISGVDISNVXRLNIRDLAPGGHLGRFIIWTEGAYKKLDKLYGTRFRTA 271

Query: 185 KQKKNFNLPQPKMANTDLTRLL 250
             K  +  P P + NTDL+R++
Sbjct: 272 LLKNEYKHPTPSVTNTDLSRII 293


>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
           putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
           protein L4/L1, putative - Plasmodium chabaudi
          Length = 411

 Score = 72.9 bits (171), Expect = 7e-12
 Identities = 32/83 (38%), Positives = 49/83 (59%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           ++ D G+ +AFRNIPGV+            APGG +GR  IW++ AF +LD ++G     
Sbjct: 211 YSXDSGIKKAFRNIPGVDLCNVTKLNLLKLAPGGSIGRLCIWSEDAFKKLDVIYGKTFQK 270

Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
              KKN+ LP+P + N D+ R++
Sbjct: 271 YVTKKNYILPKPIVNNADIYRII 293


>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
           Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
           protein L4 - Entamoeba histolytica HM-1:IMSS
          Length = 431

 Score = 72.5 bits (170), Expect = 9e-12
 Identities = 33/82 (40%), Positives = 49/82 (59%)
 Frame = +2

Query: 5   NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 184
           N D    +AFRNIPGV+            APG H+GRF+IWT+SAF +L+ +FG+ K  +
Sbjct: 214 NDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIGRFIIWTESAFKKLNTIFGTQKKMA 273

Query: 185 KQKKNFNLPQPKMANTDLTRLL 250
           + K  F +   +MA  D+ R++
Sbjct: 274 QGKSGFRIAHAQMAVPDMKRVV 295



 Score = 34.3 bits (75), Expect = 2.9
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 259 EIRKVLRAPNKRVI-RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
           E  K+LRA  K V+ +  ++ NPL N  AM+KLNPYA +   K     + +   KA   A
Sbjct: 299 EKAKLLRA--KIVLPKVPKRANPLKNWAAMVKLNPYAKIASHKLAQVAKAQAAHKAQYAA 356

Query: 436 EKSGLKLSKR 465
           +   +  +K+
Sbjct: 357 KMEKILAAKK 366


>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
           Cryptosporidium|Rep: 60S ribosomal protein-like,
           putative - Cryptosporidium parvum Iowa II
          Length = 394

 Score = 69.3 bits (162), Expect = 8e-11
 Identities = 31/83 (37%), Positives = 46/83 (55%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           + +D G+ +A RNI GV+            APGG  GR  I+T+ A  RL  ++GS+   
Sbjct: 214 YAEDNGIVKAMRNIKGVDTCSVERLNLLRLAPGGTFGRLTIFTKGAIKRLQEIYGSYTHG 273

Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
           S  K  + LP+P M N D+TR++
Sbjct: 274 SSSKVGYTLPRPAMTNADITRII 296


>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
           Trichomonas vaginalis G3|Rep: Ribosomal protein,
           putative - Trichomonas vaginalis G3
          Length = 370

 Score = 66.1 bits (154), Expect = 8e-10
 Identities = 32/83 (38%), Positives = 47/83 (56%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           +N+D+G+ +AFRNIPGVE            AP   +GR  +WT+SAF  LD ++ S    
Sbjct: 208 YNEDKGIVKAFRNIPGVETISVKALALAKLAPAAQVGRLTVWTESAFKALDGIYES---- 263

Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
              KK F+LP+  M N D+  ++
Sbjct: 264 ---KKRFSLPRSIMTNADIEAVI 283


>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_974, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 386

 Score = 64.5 bits (150), Expect = 2e-09
 Identities = 28/59 (47%), Positives = 40/59 (67%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 196
           L +AFRNIPGVE            APGGHLGRFVIWT+S+F +LD ++ S++   ++++
Sbjct: 81  LVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSSFEKLDSIYRSFEKKLRRRR 139


>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
           ATCC 50803
          Length = 316

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 28/80 (35%), Positives = 45/80 (56%)
 Frame = +2

Query: 14  QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQK 193
           + + R FRN+PGV+            APG H GR ++WT+SAF  LD ++ +       K
Sbjct: 202 EDVARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWTKSAFASLDDVYAA-------K 254

Query: 194 KNFNLPQPKMANTDLTRLLK 253
           +N+ LP+  +  TD+ R+L+
Sbjct: 255 QNYTLPRSCITQTDIERILQ 274


>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
           Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
           Encephalitozoon cuniculi
          Length = 335

 Score = 56.8 bits (131), Expect = 5e-07
 Identities = 28/72 (38%), Positives = 38/72 (52%)
 Frame = +2

Query: 32  FRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLP 211
           FRNI GV+            APGG  GR +IWT+SAF +LD +FG  +  ++    F LP
Sbjct: 217 FRNIRGVDQMSIDSLDLLELAPGGVAGRLIIWTESAFEKLDKIFGGVEREAELTPGFKLP 276

Query: 212 QPKMANTDLTRL 247
              + + DL  L
Sbjct: 277 NRIVTHDDLEEL 288


>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
           protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
           similar to ribosomal protein L4 - Canis familiaris
          Length = 253

 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 29/65 (44%), Positives = 39/65 (60%)
 Frame = +1

Query: 259 EIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAE 438
           EI++ L+AP K++ R   K NPL N   MLKLNPYA  ++R  I  LR+ KN K   D  
Sbjct: 136 EIQRALQAPRKKIHRRVLKKNPLKNLGIMLKLNPYAKTMRRNTI--LRQAKNHKLRMDKS 193

Query: 439 KSGLK 453
            + L+
Sbjct: 194 AAALE 198



 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +2

Query: 137 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 253
           AF +LD L+G+W   +  K N+NLP  KM NTDL+R+LK
Sbjct: 95  AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILK 133


>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
           protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
           similar to ribosomal protein L4 - Canis familiaris
          Length = 248

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +2

Query: 137 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 253
           AF +LD L+G+W   +  K N+NLP  KM NTDL+R+LK
Sbjct: 173 AFCKLDDLYGTWPKAASLKSNYNLPMHKMLNTDLSRILK 211



 Score = 38.7 bits (86), Expect = 0.13
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 262 IRKVLRAPNKRVIRAT-RKLNPLTNNKAMLKLNP 360
           I++ LRAP KR+ R   +K NPL N + MLKLNP
Sbjct: 215 IQRALRAPRKRIHRRVLKKKNPLKNLRLMLKLNP 248


>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
           bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
          Length = 360

 Score = 49.6 bits (113), Expect = 7e-05
 Identities = 31/81 (38%), Positives = 40/81 (49%)
 Frame = +2

Query: 26  RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFN 205
           RAFRNIPGVE            AP G LGR  +W++SAF  LD        P+K  KN +
Sbjct: 213 RAFRNIPGVEVACVERLNLLKLAPAGALGRLCVWSKSAFEALDDYIK--MMPTKLLKNAD 270

Query: 206 LPQPKMANTDLTRLLKLMRSG 268
           L    + +T +   L+  R G
Sbjct: 271 L-SALIESTPVQAALRAPREG 290


>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
           protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
           similar to ribosomal protein L4 - Rattus norvegicus
          Length = 140

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = +1

Query: 250 QVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRK-NLKA 423
           ++ EI++ L+AP K +     K NPLTN + MLKLNP A  + R  IL E R  K  +K+
Sbjct: 14  KIPEIQRALQAPCKEIQHRVSKKNPLTNLRIMLKLNPDAKTMHRNTILPEARNHKLQVKS 73

Query: 424 LADAEKSGLKL 456
                ++G +L
Sbjct: 74  RKQQPRTGSQL 84


>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
           organisms|Rep: Ribosomal protein L4 - uncultured marine
           group II euryarchaeote DeepAnt-JyKC7
          Length = 304

 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 5   NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154
           ++  GL +A RNIPGV+            APGG  GR  +WT++A G L+
Sbjct: 255 SQTNGLAKAARNIPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKAAIGALE 304


>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
           putative; n=2; Theileria|Rep: 60S ribosomal subunit
           protein L4/L1, putative - Theileria annulata
          Length = 426

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +2

Query: 26  RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154
           RAFRNIPGV+            AP G LGR VI+++SAF  LD
Sbjct: 212 RAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFSKSAFELLD 254


>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
           Euryarchaeota|Rep: 50S ribosomal protein L4P -
           Archaeoglobus fulgidus
          Length = 252

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 8   KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSA 139
           KD G+ +A +N+PGV+            APG H GR  +WT+SA
Sbjct: 200 KDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWTKSA 243


>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
           Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
           Guillardia theta (Cryptomonas phi)
          Length = 255

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 26  RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 160
           ++ RNI  ++            APGGHLGR  IW+  AF  L+ +
Sbjct: 210 KSLRNIANIDCMKISALNLTKLAPGGHLGRLCIWSSKAFQMLNTI 254


>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
           Euryarchaeota|Rep: 50S ribosomal protein L4P -
           Methanosphaera stadtmanae (strain DSM 3091)
          Length = 259

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +2

Query: 11  DQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 163
           D+G++   RN  GV+            APG H GR  I+T+SA  +L  LF
Sbjct: 204 DRGISLGARNHAGVDVVEVNNINAELLAPGTHAGRLTIYTKSAIEKLGDLF 254


>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
           Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
           aerophilum
          Length = 283

 Score = 36.3 bits (80), Expect = 0.71
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 163
           L  A RN PGV+            APGG  GR  +WT  A  +L  LF
Sbjct: 235 LIAAVRNFPGVDVVAVNNLNILVLAPGGVPGRLTLWTAPAVEKLRGLF 282


>UniRef50_A6GVL2 Cluster: Putative cell surface protein SprD; n=1;
           Flavobacterium psychrophilum JIP02/86|Rep: Putative cell
           surface protein SprD - Flavobacterium psychrophilum
           (strain JIP02/86 / ATCC 49511)
          Length = 1286

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +1

Query: 289 KRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEK 441
           K +++AT+K NP T N  + K  P     +R   L L+  K+ KA A+AEK
Sbjct: 310 KPIVKATKKTNPGTKNATVNKKTPADLQKERAEALALKTEKD-KARAEAEK 359


>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
           Euryarchaeota|Rep: 50S ribosomal protein L4P -
           Methanopyrus kandleri
          Length = 260

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 5   NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 166
           ++D+G+    RN PGV+            APG H GR  ++T  A   L+   G
Sbjct: 206 DEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAHPGRLTVFTPGALEVLEERLG 259


>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major strain Friedlin
          Length = 534

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +1

Query: 25  SRLPQHPRCGXXXXXXXXXXXXGSGRPSWTFRHLDSVRIRQA*PLIRVMEDTIKTKEELQ 204
           +R+PQH R G            G+  P W  R LD+V +R A   +  +   ++ +E L 
Sbjct: 269 ARVPQHLRAGPGECERAEPAAPGARWPRWPLRDLDAVCVRAAGQDLWHVHGGVRCEEGLH 328

Query: 205 PAPTEDGQH 231
            A  +  +H
Sbjct: 329 AAGADADEH 337


>UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr protein;
           n=1; Bos taurus|Rep: PREDICTED: similar to Hrnr protein
           - Bos taurus
          Length = 1606

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 120 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRR 221
           SSG   H +GL+  S +G+H    R++S+C  +R
Sbjct: 566 SSGFGQHGSGLSQSSSYGQHGSTSRQSSSCGQQR 599


>UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotein;
           n=1; Ureaplasma parvum|Rep: Unique hypothetical membrane
           lipoprotein - Ureaplasma parvum (Ureaplasma urealyticum
           biotype 1)
          Length = 705

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 22/82 (26%), Positives = 41/82 (50%)
 Frame = +1

Query: 241 TSSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 420
           + S+VD+ + + +   K+    T  +       A+L  + Y+ VLK KA  +L+   NLK
Sbjct: 33  SKSKVDDKQVLFKI--KKFKTTTNSIELFLEGSAVLASHSYSVVLKEKATGDLKTINNLK 90

Query: 421 ALADAEKSGLKLSKRNPAMKAE 486
            + D + + L +++  P M  E
Sbjct: 91  LVKDNDLNKLIINELKPNMGYE 112


>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
           Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
           solfataricus
          Length = 267

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154
           + +A RN+ GV+            APG H GR  I+T+S+   LD
Sbjct: 214 IIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLTIYTESSIKILD 258


>UniRef50_Q6AIU3 Cluster: Probable RNAse E; n=1; Desulfotalea
           psychrophila|Rep: Probable RNAse E - Desulfotalea
           psychrophila
          Length = 883

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 175 DTIKTKEELQPAPTEDGQH*PHTSSQVDEIRKVLRAPNKRVIRATRKLNPLTN-NKAMLK 351
           D++  K  + PAP  +       SS  ++  K  + PN+R  R  RK  P T+  +A+ K
Sbjct: 270 DSVAEKAPMDPAPVSEKAVAAEASSGEEKDEKASKGPNRRRSRRPRKRRPATDEQEAVAK 329

Query: 352 LNPYA 366
             P A
Sbjct: 330 DAPVA 334


>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
           Thermoplasmatales|Rep: 50S ribosomal protein L4P -
           Thermoplasma acidophilum
          Length = 255

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 8   KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 151
           ++    +AFR++PGV+            APGG  GR  I+T+ A   L
Sbjct: 203 RNSSAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIFTEGAIESL 250


>UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia
           intracellularis PHE/MN1-00|Rep: Outer membrane protein -
           Lawsonia intracellularis (strain PHE/MN1-00)
          Length = 601

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 316 LNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSG 447
           LNP+   KA L + PY    K+K IL LR R +     D  K+G
Sbjct: 419 LNPIQGTKATLNVTPYIGKYKKK-ILTLRSRFDFSFYIDVLKTG 461


>UniRef50_Q6BZN9 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 831

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +3

Query: 342 DAETQSLRGRAEEESYLRAAQKEELEGSC*CREEWIEAV*AKPRYEG*ETTRDETQNI 515
           + E Q L G  EE   LR A++EE++G     EE +E   AKP  E  +   DE+Q +
Sbjct: 561 ETEKQILVG--EEAGRLRQAEEEEIQG---LGEEEVEVERAKPATEAKDAAEDESQRL 613


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,770,429
Number of Sequences: 1657284
Number of extensions: 11623508
Number of successful extensions: 29982
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 28872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29962
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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