BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30845 (690 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 139 5e-32 UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 123 5e-27 UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 103 5e-21 UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 93 4e-18 UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 89 9e-17 UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 87 5e-16 UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 86 9e-16 UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 80 4e-14 UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 79 1e-13 UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 73 7e-12 UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 73 9e-12 UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 69 8e-11 UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 66 8e-10 UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 64 2e-09 UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 60 4e-08 UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 57 5e-07 UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 54 2e-06 UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 50 4e-05 UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 50 7e-05 UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 49 1e-04 UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 46 7e-04 UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 44 0.005 UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 43 0.006 UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 38 0.23 UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 38 0.23 UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 36 0.71 UniRef50_A6GVL2 Cluster: Putative cell surface protein SprD; n=1... 35 1.6 UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 35 1.6 UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 34 2.9 UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr prote... 34 3.8 UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotei... 34 3.8 UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 33 5.0 UniRef50_Q6AIU3 Cluster: Probable RNAse E; n=1; Desulfotalea psy... 33 6.6 UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 33 6.6 UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia i... 33 8.7 UniRef50_Q6BZN9 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 33 8.7 >UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygota|Rep: Ribosomal protein 23 - Lonomia obliqua (Moth) Length = 274 Score = 139 bits (337), Expect = 5e-32 Identities = 62/84 (73%), Positives = 70/84 (83%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 +NKDQGLTR+FRNIPGV+ APGGH+GRF+IWTQSAF RLD +FGSWKTP Sbjct: 76 YNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFERLDAIFGSWKTP 135 Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253 SK+KKNFNLPQPKMANTDL+RLLK Sbjct: 136 SKEKKNFNLPQPKMANTDLSRLLK 159 Score = 110 bits (265), Expect = 3e-23 Identities = 54/76 (71%), Positives = 65/76 (85%) Frame = +1 Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435 +EIR+VLRAP KRV+RATRKLNPLTN KAMLKLNPYAAVLK+KA+L+ +RKN +AL A Sbjct: 161 EEIRRVLRAPIKRVVRATRKLNPLTNTKAMLKLNPYAAVLKKKAVLDQVKRKNKRALEVA 220 Query: 436 EKSGLKLSKRNPAMKA 483 EK G+KL +PA+KA Sbjct: 221 EKRGIKLPDDDPAVKA 236 >UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila melanogaster (Fruit fly) Length = 401 Score = 123 bits (296), Expect = 5e-27 Identities = 54/84 (64%), Positives = 65/84 (77%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 ++KD+GL +AFRNIPG+E APGGH+GRFVIWT+SAF RL+ LFG+WK P Sbjct: 214 YDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKP 273 Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253 S KK +NLPQPKMANTDL+RLLK Sbjct: 274 STLKKGYNLPQPKMANTDLSRLLK 297 Score = 81.8 bits (193), Expect = 1e-14 Identities = 39/69 (56%), Positives = 51/69 (73%) Frame = +1 Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435 +EIRKVLR P KRV R+ R+LNPLTN + ++KLNPYA VLKR+A L +R K LA A Sbjct: 299 EEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKA 358 Query: 436 EKSGLKLSK 462 +K ++L+K Sbjct: 359 KKQNVELAK 367 >UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens (Human) Length = 427 Score = 103 bits (246), Expect = 5e-21 Identities = 43/84 (51%), Positives = 58/84 (69%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 +N+D G+ +AFRNIPG+ APGGH+GRF IWT+SAF +LD L+G+W+ Sbjct: 211 YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKA 270 Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253 + K N+NLP KM NTDL+R+LK Sbjct: 271 ASLKSNYNLPMHKMINTDLSRILK 294 Score = 56.0 bits (129), Expect = 8e-07 Identities = 26/54 (48%), Positives = 34/54 (62%) Frame = +1 Query: 259 EIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 420 EI++ LRAP K++ R K NPL N + MLKLNPYA ++R IL R L+ Sbjct: 297 EIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350 >UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1; Ostreococcus tauri|Rep: Ribosomal protein RPL1/RPL2/RL4L4 - Ostreococcus tauri Length = 404 Score = 93.5 bits (222), Expect = 4e-18 Identities = 43/83 (51%), Positives = 56/83 (67%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 +++D G+TRAFRNIPGVE APGGH+GRF+IWT+SAF +LD +FG+ + Sbjct: 214 YSEDNGVTRAFRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSAFEKLDSIFGTSTSK 273 Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250 S KK + P MA TDLTRL+ Sbjct: 274 SASKKGWKPPTNIMAQTDLTRLI 296 Score = 43.6 bits (98), Expect = 0.005 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Frame = +1 Query: 256 DEIRKVLRAPNKRVIRATRKL--NPLTNNKAMLKLNPYAAVLKR-KAILELRRRKNLKAL 426 DEI+ L AP IRA L NPL N AM KLNPYA V + +A + R K A Sbjct: 299 DEIQSALNAPKLGAIRAHAPLKRNPLKNKSAMDKLNPYAKVAREMQARAQEERSKAKAAK 358 Query: 427 ADAEKSGL 450 ++A +S + Sbjct: 359 SNAARSAV 366 >UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Oligohymenophorea|Rep: Ribosomal protein L4, putative - Paramecium tetraurelia Length = 406 Score = 89.0 bits (211), Expect = 9e-17 Identities = 45/103 (43%), Positives = 58/103 (56%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD LFG+++ Sbjct: 213 FNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFAHLDKLFGTYRYA 272 Query: 182 SKQKKNFNLPQPKMANTDLTRLLKLMRSGRSSVLPTNA*SVLH 310 S K + L +P + N DL R++ + V P VLH Sbjct: 273 SVLKDGYQLLRPLLTNPDLARIIN-SNQVQEKVQPAKTTKVLH 314 Score = 41.1 bits (92), Expect = 0.025 Identities = 29/79 (36%), Positives = 40/79 (50%) Frame = +1 Query: 244 SSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA 423 S+QV E KV A +V+ +K NPL N KAM +LNPYA + A+ ++ Sbjct: 297 SNQVQE--KVQPAKTTKVLHDVQKKNPLKNTKAMDRLNPYAKKQRAAAVAAIK------- 347 Query: 424 LADAEKSGLKLSKRNPAMK 480 A G K K+N A+K Sbjct: 348 ---ANTKGTKKIKKNKALK 363 >UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; Phaeosphaeria nodorum|Rep: Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum) Length = 349 Score = 86.6 bits (205), Expect = 5e-16 Identities = 39/77 (50%), Positives = 49/77 (63%) Frame = +2 Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199 L +AFRNIPGVE APGGHLGRF++WT SAFG LD ++GS PS KK+ Sbjct: 199 LVKAFRNIPGVETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGALDTIYGSTTEPSALKKD 258 Query: 200 FNLPQPKMANTDLTRLL 250 F LP M DL++++ Sbjct: 259 FLLPSTMMKQPDLSKII 275 Score = 33.1 bits (72), Expect = 6.6 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%) Frame = +1 Query: 259 EIRKVLR-----APNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 390 +I+KVLR A +KR + +K NPL N + L+LNPYAA ++ + Sbjct: 279 DIQKVLRPVRGGAVSKRGV--VQKKNPLKNFQVQLRLNPYAATFSKEKL 325 >UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum Length = 252 Score = 85.8 bits (203), Expect = 9e-16 Identities = 40/83 (48%), Positives = 52/83 (62%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD LFG+++ Sbjct: 59 FNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFANLDKLFGTYRYS 118 Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250 S K + L +P + N DL R++ Sbjct: 119 SILKDGYQLLRPLLTNPDLARII 141 Score = 40.7 bits (91), Expect = 0.033 Identities = 29/81 (35%), Positives = 41/81 (50%) Frame = +1 Query: 244 SSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA 423 S+QV E KV A V+ +K NPL N+KA+ +LNPYA ++R A Sbjct: 143 SNQVQE--KVQAAKQTTVLHEVQKKNPLKNSKALDRLNPYAK----------KQRAAATA 190 Query: 424 LADAEKSGLKLSKRNPAMKAE 486 A +G K K+N A+K + Sbjct: 191 AVKAHTTGTKKIKKNKALKKQ 211 >UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Sclerotiniaceae|Rep: 60S ribosomal protein L4 - Sclerotinia sclerotiorum 1980 Length = 373 Score = 80.2 bits (189), Expect = 4e-14 Identities = 37/77 (48%), Positives = 48/77 (62%) Frame = +2 Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199 L RAFRN+PGVE APGGHLGRF+IW+ SAF LD ++G+ PS KK+ Sbjct: 222 LVRAFRNLPGVETCDVYSLNLLQLAPGGHLGRFIIWSSSAFKALDNIYGTTTAPSALKKD 281 Query: 200 FNLPQPKMANTDLTRLL 250 F LP ++ D+ RL+ Sbjct: 282 FLLPSNVVSQADIGRLI 298 Score = 34.3 bits (75), Expect = 2.9 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%) Frame = +1 Query: 259 EIRKVLRAPNKRVI--RA-TRKLNPLTNNKAMLKLNPYAAVLKRKAI 390 E++ V+RA + RA +K NPL N + +L+LNPYAA ++ I Sbjct: 302 ELQSVIRAAKGSALTKRAGVQKKNPLLNKQVLLRLNPYAAGYSKEKI 348 >UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 - Streblomastix strix Length = 492 Score = 78.6 bits (185), Expect = 1e-13 Identities = 35/82 (42%), Positives = 52/82 (63%) Frame = +2 Query: 5 NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 184 ++++GL AFRNI GV+ APGGHLGRF+IWT+ A+ +LD L+G+ + Sbjct: 212 DQNEGLANAFRNISGVDISNVXRLNIRDLAPGGHLGRFIIWTEGAYKKLDKLYGTRFRTA 271 Query: 185 KQKKNFNLPQPKMANTDLTRLL 250 K + P P + NTDL+R++ Sbjct: 272 LLKNEYKHPTPSVTNTDLSRII 293 >UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, putative; n=5; Plasmodium|Rep: 60S ribosomal subunit protein L4/L1, putative - Plasmodium chabaudi Length = 411 Score = 72.9 bits (171), Expect = 7e-12 Identities = 32/83 (38%), Positives = 49/83 (59%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 ++ D G+ +AFRNIPGV+ APGG +GR IW++ AF +LD ++G Sbjct: 211 YSXDSGIKKAFRNIPGVDLCNVTKLNLLKLAPGGSIGRLCIWSEDAFKKLDVIYGKTFQK 270 Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250 KKN+ LP+P + N D+ R++ Sbjct: 271 YVTKKNYILPKPIVNNADIYRII 293 >UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal protein L4 - Entamoeba histolytica HM-1:IMSS Length = 431 Score = 72.5 bits (170), Expect = 9e-12 Identities = 33/82 (40%), Positives = 49/82 (59%) Frame = +2 Query: 5 NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 184 N D +AFRNIPGV+ APG H+GRF+IWT+SAF +L+ +FG+ K + Sbjct: 214 NDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIGRFIIWTESAFKKLNTIFGTQKKMA 273 Query: 185 KQKKNFNLPQPKMANTDLTRLL 250 + K F + +MA D+ R++ Sbjct: 274 QGKSGFRIAHAQMAVPDMKRVV 295 Score = 34.3 bits (75), Expect = 2.9 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +1 Query: 259 EIRKVLRAPNKRVI-RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435 E K+LRA K V+ + ++ NPL N AM+KLNPYA + K + + KA A Sbjct: 299 EKAKLLRA--KIVLPKVPKRANPLKNWAAMVKLNPYAKIASHKLAQVAKAQAAHKAQYAA 356 Query: 436 EKSGLKLSKR 465 + + +K+ Sbjct: 357 KMEKILAAKK 366 >UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4; Cryptosporidium|Rep: 60S ribosomal protein-like, putative - Cryptosporidium parvum Iowa II Length = 394 Score = 69.3 bits (162), Expect = 8e-11 Identities = 31/83 (37%), Positives = 46/83 (55%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 + +D G+ +A RNI GV+ APGG GR I+T+ A RL ++GS+ Sbjct: 214 YAEDNGIVKAMRNIKGVDTCSVERLNLLRLAPGGTFGRLTIFTKGAIKRLQEIYGSYTHG 273 Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250 S K + LP+P M N D+TR++ Sbjct: 274 SSSKVGYTLPRPAMTNADITRII 296 >UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein, putative - Trichomonas vaginalis G3 Length = 370 Score = 66.1 bits (154), Expect = 8e-10 Identities = 32/83 (38%), Positives = 47/83 (56%) Frame = +2 Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181 +N+D+G+ +AFRNIPGVE AP +GR +WT+SAF LD ++ S Sbjct: 208 YNEDKGIVKAFRNIPGVETISVKALALAKLAPAAQVGRLTVWTESAFKALDGIYES---- 263 Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250 KK F+LP+ M N D+ ++ Sbjct: 264 ---KKRFSLPRSIMTNADIEAVI 283 >UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_974, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 386 Score = 64.5 bits (150), Expect = 2e-09 Identities = 28/59 (47%), Positives = 40/59 (67%) Frame = +2 Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 196 L +AFRNIPGVE APGGHLGRFVIWT+S+F +LD ++ S++ ++++ Sbjct: 81 LVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSSFEKLDSIYRSFEKKLRRRR 139 >UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia ATCC 50803 Length = 316 Score = 60.5 bits (140), Expect = 4e-08 Identities = 28/80 (35%), Positives = 45/80 (56%) Frame = +2 Query: 14 QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQK 193 + + R FRN+PGV+ APG H GR ++WT+SAF LD ++ + K Sbjct: 202 EDVARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWTKSAFASLDDVYAA-------K 254 Query: 194 KNFNLPQPKMANTDLTRLLK 253 +N+ LP+ + TD+ R+L+ Sbjct: 255 QNYTLPRSCITQTDIERILQ 274 >UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 - Encephalitozoon cuniculi Length = 335 Score = 56.8 bits (131), Expect = 5e-07 Identities = 28/72 (38%), Positives = 38/72 (52%) Frame = +2 Query: 32 FRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLP 211 FRNI GV+ APGG GR +IWT+SAF +LD +FG + ++ F LP Sbjct: 217 FRNIRGVDQMSIDSLDLLELAPGGVAGRLIIWTESAFEKLDKIFGGVEREAELTPGFKLP 276 Query: 212 QPKMANTDLTRL 247 + + DL L Sbjct: 277 NRIVTHDDLEEL 288 >UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED: similar to ribosomal protein L4 - Canis familiaris Length = 253 Score = 54.4 bits (125), Expect = 2e-06 Identities = 29/65 (44%), Positives = 39/65 (60%) Frame = +1 Query: 259 EIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAE 438 EI++ L+AP K++ R K NPL N MLKLNPYA ++R I LR+ KN K D Sbjct: 136 EIQRALQAPRKKIHRRVLKKNPLKNLGIMLKLNPYAKTMRRNTI--LRQAKNHKLRMDKS 193 Query: 439 KSGLK 453 + L+ Sbjct: 194 AAALE 198 Score = 50.4 bits (115), Expect = 4e-05 Identities = 21/39 (53%), Positives = 28/39 (71%) Frame = +2 Query: 137 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 253 AF +LD L+G+W + K N+NLP KM NTDL+R+LK Sbjct: 95 AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILK 133 >UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED: similar to ribosomal protein L4 - Canis familiaris Length = 248 Score = 50.4 bits (115), Expect = 4e-05 Identities = 21/39 (53%), Positives = 28/39 (71%) Frame = +2 Query: 137 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 253 AF +LD L+G+W + K N+NLP KM NTDL+R+LK Sbjct: 173 AFCKLDDLYGTWPKAASLKSNYNLPMHKMLNTDLSRILK 211 Score = 38.7 bits (86), Expect = 0.13 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = +1 Query: 262 IRKVLRAPNKRVIRAT-RKLNPLTNNKAMLKLNP 360 I++ LRAP KR+ R +K NPL N + MLKLNP Sbjct: 215 IQRALRAPRKRIHRRVLKKKNPLKNLRLMLKLNP 248 >UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia bovis|Rep: Ribosomal protein RPL4A - Babesia bovis Length = 360 Score = 49.6 bits (113), Expect = 7e-05 Identities = 31/81 (38%), Positives = 40/81 (49%) Frame = +2 Query: 26 RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFN 205 RAFRNIPGVE AP G LGR +W++SAF LD P+K KN + Sbjct: 213 RAFRNIPGVEVACVERLNLLKLAPAGALGRLCVWSKSAFEALDDYIK--MMPTKLLKNAD 270 Query: 206 LPQPKMANTDLTRLLKLMRSG 268 L + +T + L+ R G Sbjct: 271 L-SALIESTPVQAALRAPREG 290 >UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal protein L4; n=3; Rattus norvegicus|Rep: PREDICTED: similar to ribosomal protein L4 - Rattus norvegicus Length = 140 Score = 48.8 bits (111), Expect = 1e-04 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Frame = +1 Query: 250 QVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRK-NLKA 423 ++ EI++ L+AP K + K NPLTN + MLKLNP A + R IL E R K +K+ Sbjct: 14 KIPEIQRALQAPCKEIQHRVSKKNPLTNLRIMLKLNPDAKTMHRNTILPEARNHKLQVKS 73 Query: 424 LADAEKSGLKL 456 ++G +L Sbjct: 74 RKQQPRTGSQL 84 >UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular organisms|Rep: Ribosomal protein L4 - uncultured marine group II euryarchaeote DeepAnt-JyKC7 Length = 304 Score = 46.4 bits (105), Expect = 7e-04 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = +2 Query: 5 NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154 ++ GL +A RNIPGV+ APGG GR +WT++A G L+ Sbjct: 255 SQTNGLAKAARNIPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKAAIGALE 304 >UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, putative; n=2; Theileria|Rep: 60S ribosomal subunit protein L4/L1, putative - Theileria annulata Length = 426 Score = 43.6 bits (98), Expect = 0.005 Identities = 22/43 (51%), Positives = 26/43 (60%) Frame = +2 Query: 26 RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154 RAFRNIPGV+ AP G LGR VI+++SAF LD Sbjct: 212 RAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFSKSAFELLD 254 >UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarchaeota|Rep: 50S ribosomal protein L4P - Archaeoglobus fulgidus Length = 252 Score = 43.2 bits (97), Expect = 0.006 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = +2 Query: 8 KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSA 139 KD G+ +A +N+PGV+ APG H GR +WT+SA Sbjct: 200 KDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWTKSA 243 >UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomonadaceae|Rep: 60s ribosomal protein L1 - Guillardia theta (Cryptomonas phi) Length = 255 Score = 37.9 bits (84), Expect = 0.23 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 26 RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 160 ++ RNI ++ APGGHLGR IW+ AF L+ + Sbjct: 210 KSLRNIANIDCMKISALNLTKLAPGGHLGRLCIWSSKAFQMLNTI 254 >UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarchaeota|Rep: 50S ribosomal protein L4P - Methanosphaera stadtmanae (strain DSM 3091) Length = 259 Score = 37.9 bits (84), Expect = 0.23 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +2 Query: 11 DQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 163 D+G++ RN GV+ APG H GR I+T+SA +L LF Sbjct: 204 DRGISLGARNHAGVDVVEVNNINAELLAPGTHAGRLTIYTKSAIEKLGDLF 254 >UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum aerophilum Length = 283 Score = 36.3 bits (80), Expect = 0.71 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = +2 Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 163 L A RN PGV+ APGG GR +WT A +L LF Sbjct: 235 LIAAVRNFPGVDVVAVNNLNILVLAPGGVPGRLTLWTAPAVEKLRGLF 282 >UniRef50_A6GVL2 Cluster: Putative cell surface protein SprD; n=1; Flavobacterium psychrophilum JIP02/86|Rep: Putative cell surface protein SprD - Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) Length = 1286 Score = 35.1 bits (77), Expect = 1.6 Identities = 20/51 (39%), Positives = 29/51 (56%) Frame = +1 Query: 289 KRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEK 441 K +++AT+K NP T N + K P +R L L+ K+ KA A+AEK Sbjct: 310 KPIVKATKKTNPGTKNATVNKKTPADLQKERAEALALKTEKD-KARAEAEK 359 >UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryarchaeota|Rep: 50S ribosomal protein L4P - Methanopyrus kandleri Length = 260 Score = 35.1 bits (77), Expect = 1.6 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +2 Query: 5 NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 166 ++D+G+ RN PGV+ APG H GR ++T A L+ G Sbjct: 206 DEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAHPGRLTVFTPGALEVLEERLG 259 >UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; Leishmania|Rep: Putative uncharacterized protein - Leishmania major strain Friedlin Length = 534 Score = 34.3 bits (75), Expect = 2.9 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = +1 Query: 25 SRLPQHPRCGXXXXXXXXXXXXGSGRPSWTFRHLDSVRIRQA*PLIRVMEDTIKTKEELQ 204 +R+PQH R G G+ P W R LD+V +R A + + ++ +E L Sbjct: 269 ARVPQHLRAGPGECERAEPAAPGARWPRWPLRDLDAVCVRAAGQDLWHVHGGVRCEEGLH 328 Query: 205 PAPTEDGQH 231 A + +H Sbjct: 329 AAGADADEH 337 >UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr protein; n=1; Bos taurus|Rep: PREDICTED: similar to Hrnr protein - Bos taurus Length = 1606 Score = 33.9 bits (74), Expect = 3.8 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +3 Query: 120 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRR 221 SSG H +GL+ S +G+H R++S+C +R Sbjct: 566 SSGFGQHGSGLSQSSSYGQHGSTSRQSSSCGQQR 599 >UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotein; n=1; Ureaplasma parvum|Rep: Unique hypothetical membrane lipoprotein - Ureaplasma parvum (Ureaplasma urealyticum biotype 1) Length = 705 Score = 33.9 bits (74), Expect = 3.8 Identities = 22/82 (26%), Positives = 41/82 (50%) Frame = +1 Query: 241 TSSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 420 + S+VD+ + + + K+ T + A+L + Y+ VLK KA +L+ NLK Sbjct: 33 SKSKVDDKQVLFKI--KKFKTTTNSIELFLEGSAVLASHSYSVVLKEKATGDLKTINNLK 90 Query: 421 ALADAEKSGLKLSKRNPAMKAE 486 + D + + L +++ P M E Sbjct: 91 LVKDNDLNKLIINELKPNMGYE 112 >UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus solfataricus Length = 267 Score = 33.5 bits (73), Expect = 5.0 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +2 Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154 + +A RN+ GV+ APG H GR I+T+S+ LD Sbjct: 214 IIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLTIYTESSIKILD 258 >UniRef50_Q6AIU3 Cluster: Probable RNAse E; n=1; Desulfotalea psychrophila|Rep: Probable RNAse E - Desulfotalea psychrophila Length = 883 Score = 33.1 bits (72), Expect = 6.6 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +1 Query: 175 DTIKTKEELQPAPTEDGQH*PHTSSQVDEIRKVLRAPNKRVIRATRKLNPLTN-NKAMLK 351 D++ K + PAP + SS ++ K + PN+R R RK P T+ +A+ K Sbjct: 270 DSVAEKAPMDPAPVSEKAVAAEASSGEEKDEKASKGPNRRRSRRPRKRRPATDEQEAVAK 329 Query: 352 LNPYA 366 P A Sbjct: 330 DAPVA 334 >UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermoplasmatales|Rep: 50S ribosomal protein L4P - Thermoplasma acidophilum Length = 255 Score = 33.1 bits (72), Expect = 6.6 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 8 KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 151 ++ +AFR++PGV+ APGG GR I+T+ A L Sbjct: 203 RNSSAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIFTEGAIESL 250 >UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia intracellularis PHE/MN1-00|Rep: Outer membrane protein - Lawsonia intracellularis (strain PHE/MN1-00) Length = 601 Score = 32.7 bits (71), Expect = 8.7 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +1 Query: 316 LNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSG 447 LNP+ KA L + PY K+K IL LR R + D K+G Sbjct: 419 LNPIQGTKATLNVTPYIGKYKKK-ILTLRSRFDFSFYIDVLKTG 461 >UniRef50_Q6BZN9 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep: Similarity - Yarrowia lipolytica (Candida lipolytica) Length = 831 Score = 32.7 bits (71), Expect = 8.7 Identities = 22/58 (37%), Positives = 31/58 (53%) Frame = +3 Query: 342 DAETQSLRGRAEEESYLRAAQKEELEGSC*CREEWIEAV*AKPRYEG*ETTRDETQNI 515 + E Q L G EE LR A++EE++G EE +E AKP E + DE+Q + Sbjct: 561 ETEKQILVG--EEAGRLRQAEEEEIQG---LGEEEVEVERAKPATEAKDAAEDESQRL 613 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 590,770,429 Number of Sequences: 1657284 Number of extensions: 11623508 Number of successful extensions: 29982 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 28872 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 29962 length of database: 575,637,011 effective HSP length: 98 effective length of database: 413,223,179 effective search space used: 54132236449 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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