Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30845
(690 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 139 5e-32
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 123 5e-27
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 103 5e-21
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 93 4e-18
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 89 9e-17
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 87 5e-16
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 86 9e-16
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 80 4e-14
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 79 1e-13
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 73 7e-12
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 73 9e-12
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 69 8e-11
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 66 8e-10
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 64 2e-09
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 60 4e-08
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 57 5e-07
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 54 2e-06
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 50 4e-05
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 50 7e-05
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 49 1e-04
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 46 7e-04
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 44 0.005
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 43 0.006
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 38 0.23
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 38 0.23
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 36 0.71
UniRef50_A6GVL2 Cluster: Putative cell surface protein SprD; n=1... 35 1.6
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 35 1.6
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 34 2.9
UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr prote... 34 3.8
UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotei... 34 3.8
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 33 5.0
UniRef50_Q6AIU3 Cluster: Probable RNAse E; n=1; Desulfotalea psy... 33 6.6
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 33 6.6
UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia i... 33 8.7
UniRef50_Q6BZN9 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 33 8.7
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 139 bits (337), Expect = 5e-32
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
+NKDQGLTR+FRNIPGV+ APGGH+GRF+IWTQSAF RLD +FGSWKTP
Sbjct: 76 YNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFERLDAIFGSWKTP 135
Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
SK+KKNFNLPQPKMANTDL+RLLK
Sbjct: 136 SKEKKNFNLPQPKMANTDLSRLLK 159
Score = 110 bits (265), Expect = 3e-23
Identities = 54/76 (71%), Positives = 65/76 (85%)
Frame = +1
Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
+EIR+VLRAP KRV+RATRKLNPLTN KAMLKLNPYAAVLK+KA+L+ +RKN +AL A
Sbjct: 161 EEIRRVLRAPIKRVVRATRKLNPLTNTKAMLKLNPYAAVLKKKAVLDQVKRKNKRALEVA 220
Query: 436 EKSGLKLSKRNPAMKA 483
EK G+KL +PA+KA
Sbjct: 221 EKRGIKLPDDDPAVKA 236
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 123 bits (296), Expect = 5e-27
Identities = 54/84 (64%), Positives = 65/84 (77%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
++KD+GL +AFRNIPG+E APGGH+GRFVIWT+SAF RL+ LFG+WK P
Sbjct: 214 YDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKP 273
Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
S KK +NLPQPKMANTDL+RLLK
Sbjct: 274 STLKKGYNLPQPKMANTDLSRLLK 297
Score = 81.8 bits (193), Expect = 1e-14
Identities = 39/69 (56%), Positives = 51/69 (73%)
Frame = +1
Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
+EIRKVLR P KRV R+ R+LNPLTN + ++KLNPYA VLKR+A L +R K LA A
Sbjct: 299 EEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKA 358
Query: 436 EKSGLKLSK 462
+K ++L+K
Sbjct: 359 KKQNVELAK 367
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 103 bits (246), Expect = 5e-21
Identities = 43/84 (51%), Positives = 58/84 (69%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
+N+D G+ +AFRNIPG+ APGGH+GRF IWT+SAF +LD L+G+W+
Sbjct: 211 YNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKA 270
Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
+ K N+NLP KM NTDL+R+LK
Sbjct: 271 ASLKSNYNLPMHKMINTDLSRILK 294
Score = 56.0 bits (129), Expect = 8e-07
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +1
Query: 259 EIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 420
EI++ LRAP K++ R K NPL N + MLKLNPYA ++R IL R L+
Sbjct: 297 EIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 93.5 bits (222), Expect = 4e-18
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
+++D G+TRAFRNIPGVE APGGH+GRF+IWT+SAF +LD +FG+ +
Sbjct: 214 YSEDNGVTRAFRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSAFEKLDSIFGTSTSK 273
Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
S KK + P MA TDLTRL+
Sbjct: 274 SASKKGWKPPTNIMAQTDLTRLI 296
Score = 43.6 bits (98), Expect = 0.005
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 256 DEIRKVLRAPNKRVIRATRKL--NPLTNNKAMLKLNPYAAVLKR-KAILELRRRKNLKAL 426
DEI+ L AP IRA L NPL N AM KLNPYA V + +A + R K A
Sbjct: 299 DEIQSALNAPKLGAIRAHAPLKRNPLKNKSAMDKLNPYAKVAREMQARAQEERSKAKAAK 358
Query: 427 ADAEKSGL 450
++A +S +
Sbjct: 359 SNAARSAV 366
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 89.0 bits (211), Expect = 9e-17
Identities = 45/103 (43%), Positives = 58/103 (56%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD LFG+++
Sbjct: 213 FNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFAHLDKLFGTYRYA 272
Query: 182 SKQKKNFNLPQPKMANTDLTRLLKLMRSGRSSVLPTNA*SVLH 310
S K + L +P + N DL R++ + V P VLH
Sbjct: 273 SVLKDGYQLLRPLLTNPDLARIIN-SNQVQEKVQPAKTTKVLH 314
Score = 41.1 bits (92), Expect = 0.025
Identities = 29/79 (36%), Positives = 40/79 (50%)
Frame = +1
Query: 244 SSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA 423
S+QV E KV A +V+ +K NPL N KAM +LNPYA + A+ ++
Sbjct: 297 SNQVQE--KVQPAKTTKVLHDVQKKNPLKNTKAMDRLNPYAKKQRAAAVAAIK------- 347
Query: 424 LADAEKSGLKLSKRNPAMK 480
A G K K+N A+K
Sbjct: 348 ---ANTKGTKKIKKNKALK 363
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 86.6 bits (205), Expect = 5e-16
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +2
Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
L +AFRNIPGVE APGGHLGRF++WT SAFG LD ++GS PS KK+
Sbjct: 199 LVKAFRNIPGVETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGALDTIYGSTTEPSALKKD 258
Query: 200 FNLPQPKMANTDLTRLL 250
F LP M DL++++
Sbjct: 259 FLLPSTMMKQPDLSKII 275
Score = 33.1 bits (72), Expect = 6.6
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Frame = +1
Query: 259 EIRKVLR-----APNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 390
+I+KVLR A +KR + +K NPL N + L+LNPYAA ++ +
Sbjct: 279 DIQKVLRPVRGGAVSKRGV--VQKKNPLKNFQVQLRLNPYAATFSKEKL 325
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 85.8 bits (203), Expect = 9e-16
Identities = 40/83 (48%), Positives = 52/83 (62%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD LFG+++
Sbjct: 59 FNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFANLDKLFGTYRYS 118
Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
S K + L +P + N DL R++
Sbjct: 119 SILKDGYQLLRPLLTNPDLARII 141
Score = 40.7 bits (91), Expect = 0.033
Identities = 29/81 (35%), Positives = 41/81 (50%)
Frame = +1
Query: 244 SSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA 423
S+QV E KV A V+ +K NPL N+KA+ +LNPYA ++R A
Sbjct: 143 SNQVQE--KVQAAKQTTVLHEVQKKNPLKNSKALDRLNPYAK----------KQRAAATA 190
Query: 424 LADAEKSGLKLSKRNPAMKAE 486
A +G K K+N A+K +
Sbjct: 191 AVKAHTTGTKKIKKNKALKKQ 211
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 80.2 bits (189), Expect = 4e-14
Identities = 37/77 (48%), Positives = 48/77 (62%)
Frame = +2
Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
L RAFRN+PGVE APGGHLGRF+IW+ SAF LD ++G+ PS KK+
Sbjct: 222 LVRAFRNLPGVETCDVYSLNLLQLAPGGHLGRFIIWSSSAFKALDNIYGTTTAPSALKKD 281
Query: 200 FNLPQPKMANTDLTRLL 250
F LP ++ D+ RL+
Sbjct: 282 FLLPSNVVSQADIGRLI 298
Score = 34.3 bits (75), Expect = 2.9
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +1
Query: 259 EIRKVLRAPNKRVI--RA-TRKLNPLTNNKAMLKLNPYAAVLKRKAI 390
E++ V+RA + RA +K NPL N + +L+LNPYAA ++ I
Sbjct: 302 ELQSVIRAAKGSALTKRAGVQKKNPLLNKQVLLRLNPYAAGYSKEKI 348
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 78.6 bits (185), Expect = 1e-13
Identities = 35/82 (42%), Positives = 52/82 (63%)
Frame = +2
Query: 5 NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 184
++++GL AFRNI GV+ APGGHLGRF+IWT+ A+ +LD L+G+ +
Sbjct: 212 DQNEGLANAFRNISGVDISNVXRLNIRDLAPGGHLGRFIIWTEGAYKKLDKLYGTRFRTA 271
Query: 185 KQKKNFNLPQPKMANTDLTRLL 250
K + P P + NTDL+R++
Sbjct: 272 LLKNEYKHPTPSVTNTDLSRII 293
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 72.9 bits (171), Expect = 7e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
++ D G+ +AFRNIPGV+ APGG +GR IW++ AF +LD ++G
Sbjct: 211 YSXDSGIKKAFRNIPGVDLCNVTKLNLLKLAPGGSIGRLCIWSEDAFKKLDVIYGKTFQK 270
Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
KKN+ LP+P + N D+ R++
Sbjct: 271 YVTKKNYILPKPIVNNADIYRII 293
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 72.5 bits (170), Expect = 9e-12
Identities = 33/82 (40%), Positives = 49/82 (59%)
Frame = +2
Query: 5 NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 184
N D +AFRNIPGV+ APG H+GRF+IWT+SAF +L+ +FG+ K +
Sbjct: 214 NDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIGRFIIWTESAFKKLNTIFGTQKKMA 273
Query: 185 KQKKNFNLPQPKMANTDLTRLL 250
+ K F + +MA D+ R++
Sbjct: 274 QGKSGFRIAHAQMAVPDMKRVV 295
Score = 34.3 bits (75), Expect = 2.9
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 EIRKVLRAPNKRVI-RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
E K+LRA K V+ + ++ NPL N AM+KLNPYA + K + + KA A
Sbjct: 299 EKAKLLRA--KIVLPKVPKRANPLKNWAAMVKLNPYAKIASHKLAQVAKAQAAHKAQYAA 356
Query: 436 EKSGLKLSKR 465
+ + +K+
Sbjct: 357 KMEKILAAKK 366
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 69.3 bits (162), Expect = 8e-11
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
+ +D G+ +A RNI GV+ APGG GR I+T+ A RL ++GS+
Sbjct: 214 YAEDNGIVKAMRNIKGVDTCSVERLNLLRLAPGGTFGRLTIFTKGAIKRLQEIYGSYTHG 273
Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
S K + LP+P M N D+TR++
Sbjct: 274 SSSKVGYTLPRPAMTNADITRII 296
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 66.1 bits (154), Expect = 8e-10
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +2
Query: 2 FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
+N+D+G+ +AFRNIPGVE AP +GR +WT+SAF LD ++ S
Sbjct: 208 YNEDKGIVKAFRNIPGVETISVKALALAKLAPAAQVGRLTVWTESAFKALDGIYES---- 263
Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
KK F+LP+ M N D+ ++
Sbjct: 264 ---KKRFSLPRSIMTNADIEAVI 283
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 64.5 bits (150), Expect = 2e-09
Identities = 28/59 (47%), Positives = 40/59 (67%)
Frame = +2
Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 196
L +AFRNIPGVE APGGHLGRFVIWT+S+F +LD ++ S++ ++++
Sbjct: 81 LVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSSFEKLDSIYRSFEKKLRRRR 139
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 60.5 bits (140), Expect = 4e-08
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +2
Query: 14 QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQK 193
+ + R FRN+PGV+ APG H GR ++WT+SAF LD ++ + K
Sbjct: 202 EDVARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWTKSAFASLDDVYAA-------K 254
Query: 194 KNFNLPQPKMANTDLTRLLK 253
+N+ LP+ + TD+ R+L+
Sbjct: 255 QNYTLPRSCITQTDIERILQ 274
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 56.8 bits (131), Expect = 5e-07
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +2
Query: 32 FRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLP 211
FRNI GV+ APGG GR +IWT+SAF +LD +FG + ++ F LP
Sbjct: 217 FRNIRGVDQMSIDSLDLLELAPGGVAGRLIIWTESAFEKLDKIFGGVEREAELTPGFKLP 276
Query: 212 QPKMANTDLTRL 247
+ + DL L
Sbjct: 277 NRIVTHDDLEEL 288
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 54.4 bits (125), Expect = 2e-06
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +1
Query: 259 EIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAE 438
EI++ L+AP K++ R K NPL N MLKLNPYA ++R I LR+ KN K D
Sbjct: 136 EIQRALQAPRKKIHRRVLKKNPLKNLGIMLKLNPYAKTMRRNTI--LRQAKNHKLRMDKS 193
Query: 439 KSGLK 453
+ L+
Sbjct: 194 AAALE 198
Score = 50.4 bits (115), Expect = 4e-05
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +2
Query: 137 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 253
AF +LD L+G+W + K N+NLP KM NTDL+R+LK
Sbjct: 95 AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILK 133
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 50.4 bits (115), Expect = 4e-05
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +2
Query: 137 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLK 253
AF +LD L+G+W + K N+NLP KM NTDL+R+LK
Sbjct: 173 AFCKLDDLYGTWPKAASLKSNYNLPMHKMLNTDLSRILK 211
Score = 38.7 bits (86), Expect = 0.13
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 262 IRKVLRAPNKRVIRAT-RKLNPLTNNKAMLKLNP 360
I++ LRAP KR+ R +K NPL N + MLKLNP
Sbjct: 215 IQRALRAPRKRIHRRVLKKKNPLKNLRLMLKLNP 248
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 49.6 bits (113), Expect = 7e-05
Identities = 31/81 (38%), Positives = 40/81 (49%)
Frame = +2
Query: 26 RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFN 205
RAFRNIPGVE AP G LGR +W++SAF LD P+K KN +
Sbjct: 213 RAFRNIPGVEVACVERLNLLKLAPAGALGRLCVWSKSAFEALDDYIK--MMPTKLLKNAD 270
Query: 206 LPQPKMANTDLTRLLKLMRSG 268
L + +T + L+ R G
Sbjct: 271 L-SALIESTPVQAALRAPREG 290
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +1
Query: 250 QVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRK-NLKA 423
++ EI++ L+AP K + K NPLTN + MLKLNP A + R IL E R K +K+
Sbjct: 14 KIPEIQRALQAPCKEIQHRVSKKNPLTNLRIMLKLNPDAKTMHRNTILPEARNHKLQVKS 73
Query: 424 LADAEKSGLKL 456
++G +L
Sbjct: 74 RKQQPRTGSQL 84
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 46.4 bits (105), Expect = 7e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 5 NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154
++ GL +A RNIPGV+ APGG GR +WT++A G L+
Sbjct: 255 SQTNGLAKAARNIPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKAAIGALE 304
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +2
Query: 26 RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154
RAFRNIPGV+ AP G LGR VI+++SAF LD
Sbjct: 212 RAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFSKSAFELLD 254
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 43.2 bits (97), Expect = 0.006
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 8 KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSA 139
KD G+ +A +N+PGV+ APG H GR +WT+SA
Sbjct: 200 KDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWTKSA 243
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 37.9 bits (84), Expect = 0.23
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 26 RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 160
++ RNI ++ APGGHLGR IW+ AF L+ +
Sbjct: 210 KSLRNIANIDCMKISALNLTKLAPGGHLGRLCIWSSKAFQMLNTI 254
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 37.9 bits (84), Expect = 0.23
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 11 DQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 163
D+G++ RN GV+ APG H GR I+T+SA +L LF
Sbjct: 204 DRGISLGARNHAGVDVVEVNNINAELLAPGTHAGRLTIYTKSAIEKLGDLF 254
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 36.3 bits (80), Expect = 0.71
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +2
Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 163
L A RN PGV+ APGG GR +WT A +L LF
Sbjct: 235 LIAAVRNFPGVDVVAVNNLNILVLAPGGVPGRLTLWTAPAVEKLRGLF 282
>UniRef50_A6GVL2 Cluster: Putative cell surface protein SprD; n=1;
Flavobacterium psychrophilum JIP02/86|Rep: Putative cell
surface protein SprD - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 1286
Score = 35.1 bits (77), Expect = 1.6
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 289 KRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEK 441
K +++AT+K NP T N + K P +R L L+ K+ KA A+AEK
Sbjct: 310 KPIVKATKKTNPGTKNATVNKKTPADLQKERAEALALKTEKD-KARAEAEK 359
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 5 NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 166
++D+G+ RN PGV+ APG H GR ++T A L+ G
Sbjct: 206 DEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAHPGRLTVFTPGALEVLEERLG 259
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 34.3 bits (75), Expect = 2.9
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 25 SRLPQHPRCGXXXXXXXXXXXXGSGRPSWTFRHLDSVRIRQA*PLIRVMEDTIKTKEELQ 204
+R+PQH R G G+ P W R LD+V +R A + + ++ +E L
Sbjct: 269 ARVPQHLRAGPGECERAEPAAPGARWPRWPLRDLDAVCVRAAGQDLWHVHGGVRCEEGLH 328
Query: 205 PAPTEDGQH 231
A + +H
Sbjct: 329 AAGADADEH 337
>UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr protein;
n=1; Bos taurus|Rep: PREDICTED: similar to Hrnr protein
- Bos taurus
Length = 1606
Score = 33.9 bits (74), Expect = 3.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 120 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRR 221
SSG H +GL+ S +G+H R++S+C +R
Sbjct: 566 SSGFGQHGSGLSQSSSYGQHGSTSRQSSSCGQQR 599
>UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotein;
n=1; Ureaplasma parvum|Rep: Unique hypothetical membrane
lipoprotein - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 705
Score = 33.9 bits (74), Expect = 3.8
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +1
Query: 241 TSSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 420
+ S+VD+ + + + K+ T + A+L + Y+ VLK KA +L+ NLK
Sbjct: 33 SKSKVDDKQVLFKI--KKFKTTTNSIELFLEGSAVLASHSYSVVLKEKATGDLKTINNLK 90
Query: 421 ALADAEKSGLKLSKRNPAMKAE 486
+ D + + L +++ P M E
Sbjct: 91 LVKDNDLNKLIINELKPNMGYE 112
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 33.5 bits (73), Expect = 5.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 154
+ +A RN+ GV+ APG H GR I+T+S+ LD
Sbjct: 214 IIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLTIYTESSIKILD 258
>UniRef50_Q6AIU3 Cluster: Probable RNAse E; n=1; Desulfotalea
psychrophila|Rep: Probable RNAse E - Desulfotalea
psychrophila
Length = 883
Score = 33.1 bits (72), Expect = 6.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 175 DTIKTKEELQPAPTEDGQH*PHTSSQVDEIRKVLRAPNKRVIRATRKLNPLTN-NKAMLK 351
D++ K + PAP + SS ++ K + PN+R R RK P T+ +A+ K
Sbjct: 270 DSVAEKAPMDPAPVSEKAVAAEASSGEEKDEKASKGPNRRRSRRPRKRRPATDEQEAVAK 329
Query: 352 LNPYA 366
P A
Sbjct: 330 DAPVA 334
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 33.1 bits (72), Expect = 6.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 8 KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 151
++ +AFR++PGV+ APGG GR I+T+ A L
Sbjct: 203 RNSSAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIFTEGAIESL 250
>UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia
intracellularis PHE/MN1-00|Rep: Outer membrane protein -
Lawsonia intracellularis (strain PHE/MN1-00)
Length = 601
Score = 32.7 bits (71), Expect = 8.7
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 316 LNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSG 447
LNP+ KA L + PY K+K IL LR R + D K+G
Sbjct: 419 LNPIQGTKATLNVTPYIGKYKKK-ILTLRSRFDFSFYIDVLKTG 461
>UniRef50_Q6BZN9 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 831
Score = 32.7 bits (71), Expect = 8.7
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +3
Query: 342 DAETQSLRGRAEEESYLRAAQKEELEGSC*CREEWIEAV*AKPRYEG*ETTRDETQNI 515
+ E Q L G EE LR A++EE++G EE +E AKP E + DE+Q +
Sbjct: 561 ETEKQILVG--EEAGRLRQAEEEEIQG---LGEEEVEVERAKPATEAKDAAEDESQRL 613
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,770,429
Number of Sequences: 1657284
Number of extensions: 11623508
Number of successful extensions: 29982
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 28872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29962
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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