Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30845
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    98   9e-22
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    98   1e-21
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    31   0.16 
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.63 
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    26   4.5  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   7.8  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 98.3 bits (234), Expect = 9e-22
 Identities = 45/83 (54%), Positives = 58/83 (69%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           FN+D G+ +AFRNIPGVE            APGGHLGRFVIWT+SAFG LD +FGS    
Sbjct: 211 FNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEA 270

Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
           ++ KKN+ LP+  ++N D+TRL+
Sbjct: 271 AQLKKNYFLPENIISNADVTRLI 293



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +1

Query: 256 DEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALA 429
           DEI+ +++A    RV RA  +K NPL N   + +LNPYA     KA ++L   K  KA  
Sbjct: 296 DEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAAG 353

Query: 430 D 432
           +
Sbjct: 354 E 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 45/83 (54%), Positives = 58/83 (69%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           FN+D G+ +AFRNIPGVE            APGGHLGRFVIWT+SAFG LD +FGS    
Sbjct: 211 FNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEV 270

Query: 182 SKQKKNFNLPQPKMANTDLTRLL 250
           ++ KKN+ LP+  ++N D+TRL+
Sbjct: 271 AQLKKNYFLPENIISNADVTRLI 293



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +1

Query: 256 DEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALA 429
           DEI+ +++A    RV RA  +K NPL N   + +LNPYA     KA +++   K  KA  
Sbjct: 296 DEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAAG 353

Query: 430 D 432
           +
Sbjct: 354 E 354


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +1

Query: 244  SSQVDEIRKVLRAPNKRVIRATRKLNPLTN-----NKAMLKLNPYAAVLKRKAILELRRR 408
            S Q+D +   L   N + I+ TR L  LTN        + +L P A  L+R+  L L+  
Sbjct: 1146 SKQIDYLEACLVRINAKRIQVTRLLKALTNPAFEKQMELRQLGPEA--LRRQKELRLKME 1203

Query: 409  KNLKALADAEKSGL 450
            K LK+L+  E+  +
Sbjct: 1204 KVLKSLSTLEQQAV 1217


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 306 STDHAFVGSTEDLPDLINLRRRVRSVLAIFGWGRLKFFFCFDGVFHDPNKGSS 148
           S  H +V + E +P    LR R   +L   GW        + G   +PNK  S
Sbjct: 600 SLAHVWVVAYEFVPGGPILRERTSYILIFIGWNLAALVPAYSGESKEPNKADS 652


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 193 EELQPAPTEDGQH*PHTSSQVDEIRKVLRAPNKRVIR 303
           E+L P P  + +    TS ++DE++K L  P + ++R
Sbjct: 67  EKLYPDPKRENEDRELTSEELDELKKSL-PPGQAIVR 102


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 336 VISEWVQFACSTDHAFVGSTEDLPDLINL 250
           V+S+W+Q         + ++E LPD++++
Sbjct: 231 VVSQWIQRLSQLQGQKIDNSESLPDILSI 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,622
Number of Sequences: 5004
Number of extensions: 44905
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)