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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30845
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    95   6e-20
07_01_0578 + 4295386-4296489,4297394-4297507                           94   1e-19
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456...    30   1.5  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     30   2.0  
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730...    28   8.0  
03_03_0125 - 14630078-14630136,14630197-14631160                       28   8.0  
03_03_0122 - 14617879-14618871                                         28   8.0  
02_04_0073 - 19471254-19472681                                         28   8.0  
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971...    28   8.0  

>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 41/77 (53%), Positives = 55/77 (71%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
           + +AFRN+PGV+            APGGHLGRFVIWT+ AF +LD ++G + TP+ +KK 
Sbjct: 221 VVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKG 280

Query: 200 FNLPQPKMANTDLTRLL 250
           F LP+PKMAN DL+RL+
Sbjct: 281 FVLPRPKMANADLSRLI 297



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALAD 432
           DE++ V++  NK V     + NPL N  A+LKLNPY    ++ A L E  R K      D
Sbjct: 300 DEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLD 359

Query: 433 AEKSGL 450
           ++++ L
Sbjct: 360 SKRTKL 365


>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 40/77 (51%), Positives = 56/77 (72%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
           + +AFRN+PGV+            APGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK 
Sbjct: 222 IVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKG 281

Query: 200 FNLPQPKMANTDLTRLL 250
           F LP+PKMAN DL R++
Sbjct: 282 FILPRPKMANADLGRII 298



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALAD 432
           DE++ V++  NK V R  ++ NPL N  A+LKLNPY    ++ A L E  R K  K   D
Sbjct: 301 DEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLD 360

Query: 433 AEKSGL 450
           ++++ L
Sbjct: 361 SKRTKL 366


>01_01_0612 +
           4565422-4565481,4565597-4565671,4565760-4566332,
           4566438-4566551,4566676-4567377
          Length = 507

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 157 GVKPAECGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVA 35
           G+  A  G++ DD+  K ASR  L  + ++N+    +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 92  APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 232
           APG  G  GR+V+   SA   LDP F SW   S++ K F++ +   A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717


>08_02_1476 -
           27372288-27372310,27372508-27372586,27372818-27373085,
           27373346-27373410,27373611-27373757
          Length = 193

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 123 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 31
           M  RP WP  AS R  S+   R   PG  R+
Sbjct: 1   MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31


>03_03_0125 - 14630078-14630136,14630197-14631160
          Length = 340

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 110 GRFVIWTQSAFGRL-DPLFGSWK 175
           G FV+W   AFG L   L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149


>03_03_0122 - 14617879-14618871
          Length = 330

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 110 GRFVIWTQSAFGRL-DPLFGSWK 175
           G FV+W   AFG L   L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 132 SPHSAGLTPYSGHGRHHQNKRRTSTCPN 215
           +P   G +P S HG HH++++   T  N
Sbjct: 20  APRPRGASPLSSHGHHHRSRKIHRTFNN 47


>01_06_0160 -
           27095727-27096008,27096164-27096652,27096983-27097132,
           27097656-27097920,27097995-27098274,27100311-27100388,
           27100597-27101240,27101334-27101412,27101489-27101612,
           27101782-27101882,27102870-27103068
          Length = 896

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 142 ECGLSPDDETSKMASRSQLQEVQ 74
           +CG+ PD+  S++ S+   QEV+
Sbjct: 51  DCGMDPDEAVSRLLSQDTFQEVK 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,487,126
Number of Sequences: 37544
Number of extensions: 349770
Number of successful extensions: 942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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