Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30845
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 95 6e-20
07_01_0578 + 4295386-4296489,4297394-4297507 94 1e-19
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 30 1.5
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.0
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 8.0
03_03_0125 - 14630078-14630136,14630197-14631160 28 8.0
03_03_0122 - 14617879-14618871 28 8.0
02_04_0073 - 19471254-19472681 28 8.0
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 8.0
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 94.7 bits (225), Expect = 6e-20
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +2
Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
+ +AFRN+PGV+ APGGHLGRFVIWT+ AF +LD ++G + TP+ +KK
Sbjct: 221 VVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKG 280
Query: 200 FNLPQPKMANTDLTRLL 250
F LP+PKMAN DL+RL+
Sbjct: 281 FVLPRPKMANADLSRLI 297
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALAD 432
DE++ V++ NK V + NPL N A+LKLNPY ++ A L E R K D
Sbjct: 300 DEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLD 359
Query: 433 AEKSGL 450
++++ L
Sbjct: 360 SKRTKL 365
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 93.9 bits (223), Expect = 1e-19
Identities = 40/77 (51%), Positives = 56/77 (72%)
Frame = +2
Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
+ +AFRN+PGV+ APGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK
Sbjct: 222 IVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKG 281
Query: 200 FNLPQPKMANTDLTRLL 250
F LP+PKMAN DL R++
Sbjct: 282 FILPRPKMANADLGRII 298
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALAD 432
DE++ V++ NK V R ++ NPL N A+LKLNPY ++ A L E R K K D
Sbjct: 301 DEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLD 360
Query: 433 AEKSGL 450
++++ L
Sbjct: 361 SKRTKL 366
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 157 GVKPAECGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVA 35
G+ A G++ DD+ K ASR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 232
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 123 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 31
M RP WP AS R S+ R PG R+
Sbjct: 1 MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 110 GRFVIWTQSAFGRL-DPLFGSWK 175
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 110 GRFVIWTQSAFGRL-DPLFGSWK 175
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>02_04_0073 - 19471254-19472681
Length = 475
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 132 SPHSAGLTPYSGHGRHHQNKRRTSTCPN 215
+P G +P S HG HH++++ T N
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNN 47
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 142 ECGLSPDDETSKMASRSQLQEVQ 74
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,487,126
Number of Sequences: 37544
Number of extensions: 349770
Number of successful extensions: 942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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