BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30845 (690 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 95 6e-20 07_01_0578 + 4295386-4296489,4297394-4297507 94 1e-19 01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 30 1.5 02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.0 08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 8.0 03_03_0125 - 14630078-14630136,14630197-14631160 28 8.0 03_03_0122 - 14617879-14618871 28 8.0 02_04_0073 - 19471254-19472681 28 8.0 01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 8.0 >03_06_0298 - 32925441-32925998,32926371-32926730,32927161-32927230, 32927642-32927797,32929181-32929242,32929339-32929352, 32930421-32930520,32931474-32932574 Length = 806 Score = 94.7 bits (225), Expect = 6e-20 Identities = 41/77 (53%), Positives = 55/77 (71%) Frame = +2 Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199 + +AFRN+PGV+ APGGHLGRFVIWT+ AF +LD ++G + TP+ +KK Sbjct: 221 VVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKG 280 Query: 200 FNLPQPKMANTDLTRLL 250 F LP+PKMAN DL+RL+ Sbjct: 281 FVLPRPKMANADLSRLI 297 Score = 40.7 bits (91), Expect = 0.001 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +1 Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALAD 432 DE++ V++ NK V + NPL N A+LKLNPY ++ A L E R K D Sbjct: 300 DEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLD 359 Query: 433 AEKSGL 450 ++++ L Sbjct: 360 SKRTKL 365 >07_01_0578 + 4295386-4296489,4297394-4297507 Length = 405 Score = 93.9 bits (223), Expect = 1e-19 Identities = 40/77 (51%), Positives = 56/77 (72%) Frame = +2 Query: 20 LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199 + +AFRN+PGV+ APGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK Sbjct: 222 IVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKG 281 Query: 200 FNLPQPKMANTDLTRLL 250 F LP+PKMAN DL R++ Sbjct: 282 FILPRPKMANADLGRII 298 Score = 47.2 bits (107), Expect = 1e-05 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +1 Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALAD 432 DE++ V++ NK V R ++ NPL N A+LKLNPY ++ A L E R K K D Sbjct: 301 DEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLD 360 Query: 433 AEKSGL 450 ++++ L Sbjct: 361 SKRTKL 366 >01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332, 4566438-4566551,4566676-4567377 Length = 507 Score = 30.3 bits (65), Expect = 1.5 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -3 Query: 157 GVKPAECGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVA 35 G+ A G++ DD+ K ASR L + ++N+ +GD A Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187 >02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 Length = 1030 Score = 29.9 bits (64), Expect = 2.0 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +2 Query: 92 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 232 APG G GR+V+ SA LDP F SW S++ K F++ + A++ Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717 >08_02_1476 - 27372288-27372310,27372508-27372586,27372818-27373085, 27373346-27373410,27373611-27373757 Length = 193 Score = 27.9 bits (59), Expect = 8.0 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -1 Query: 123 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 31 M RP WP AS R S+ R PG R+ Sbjct: 1 MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31 >03_03_0125 - 14630078-14630136,14630197-14631160 Length = 340 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Frame = +2 Query: 110 GRFVIWTQSAFGRL-DPLFGSWK 175 G FV+W AFG L L G+WK Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149 >03_03_0122 - 14617879-14618871 Length = 330 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Frame = +2 Query: 110 GRFVIWTQSAFGRL-DPLFGSWK 175 G FV+W AFG L L G+WK Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146 >02_04_0073 - 19471254-19472681 Length = 475 Score = 27.9 bits (59), Expect = 8.0 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +3 Query: 132 SPHSAGLTPYSGHGRHHQNKRRTSTCPN 215 +P G +P S HG HH++++ T N Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNN 47 >01_06_0160 - 27095727-27096008,27096164-27096652,27096983-27097132, 27097656-27097920,27097995-27098274,27100311-27100388, 27100597-27101240,27101334-27101412,27101489-27101612, 27101782-27101882,27102870-27103068 Length = 896 Score = 27.9 bits (59), Expect = 8.0 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -3 Query: 142 ECGLSPDDETSKMASRSQLQEVQ 74 +CG+ PD+ S++ S+ QEV+ Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,487,126 Number of Sequences: 37544 Number of extensions: 349770 Number of successful extensions: 942 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 920 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 942 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1756684372 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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