Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30845
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                46   2e-05
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   29   4.7  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/38 (52%), Positives = 23/38 (60%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 115
           +N DQGL +AFRN+PGVE             PGGHLGR
Sbjct: 208 YNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/49 (48%), Positives = 29/49 (59%)
 Frame = +1

Query: 301 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSG 447
           RA  K NPL N   ML+LNPYA   KR  +L + RR+  K  A A+K G
Sbjct: 250 RAIHKKNPLKNLGTMLRLNPYAKSAKRAEMLTVERRRAAKEAALAKKRG 298


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 164 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKLMRSGRSSV 280
           G W    K+KK ++L +PK   T     ++ + S R SV
Sbjct: 177 GGWPKGKKRKKEYDLNKPKAPVTGYVHYVRFLNSRRESV 215


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/80 (26%), Positives = 39/80 (48%)
 Frame = +1

Query: 160  IRVMEDTIKTKEELQPAPTEDGQH*PHTSSQVDEIRKVLRAPNKRVIRATRKLNPLTNNK 339
            +R  + TI ++E+     TEDG    H+S +V+ + K+    NK +     +L   T N 
Sbjct: 1678 VRDNKFTIMSQEDAMILITEDGNVKIHSSGRVESMVKIDAEGNKILDGYNSELPVQTKNM 1737

Query: 340  AMLKLNPYAAVLKRKAILEL 399
             + +  P+  VL+    +E+
Sbjct: 1738 TVTREGPF-VVLRHDIGIEI 1756


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 250 QVDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 354
           Q D I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,016,485
Number of Sequences: 59808
Number of extensions: 357043
Number of successful extensions: 1148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)