Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30845
         (690 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13382-1|CAA31759.1|  407|Drosophila melanogaster protein ( Dros...   123   3e-28
AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p pro...   123   3e-28
AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA...   123   3e-28

>X13382-1|CAA31759.1|  407|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for put. ribosomal protein
           L1. ).
          Length = 407

 Score =  123 bits (296), Expect = 3e-28
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           ++KD+GL +AFRNIPG+E            APGGH+GRFVIWT+SAF RL+ LFG+WK P
Sbjct: 214 YDKDEGLRKAFRNIPGIETINVDKLNVLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKP 273

Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
           S  KK +NLPQPKMANTDL+RLLK
Sbjct: 274 STLKKGYNLPQPKMANTDLSRLLK 297



 Score = 81.8 bits (193), Expect = 8e-16
 Identities = 39/69 (56%), Positives = 51/69 (73%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
           +EIRKVLR P KRV R+ R+LNPLTN + ++KLNPYA VLKR+A L   +R   K LA A
Sbjct: 299 EEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKA 358

Query: 436 EKSGLKLSK 462
           +K  ++L+K
Sbjct: 359 KKQNVELAK 367


>AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p
           protein.
          Length = 401

 Score =  123 bits (296), Expect = 3e-28
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           ++KD+GL +AFRNIPG+E            APGGH+GRFVIWT+SAF RL+ LFG+WK P
Sbjct: 214 YDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKP 273

Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
           S  KK +NLPQPKMANTDL+RLLK
Sbjct: 274 STLKKGYNLPQPKMANTDLSRLLK 297



 Score = 81.8 bits (193), Expect = 8e-16
 Identities = 39/69 (56%), Positives = 51/69 (73%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
           +EIRKVLR P KRV R+ R+LNPLTN + ++KLNPYA VLKR+A L   +R   K LA A
Sbjct: 299 EEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKA 358

Query: 436 EKSGLKLSK 462
           +K  ++L+K
Sbjct: 359 KKQNVELAK 367


>AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA
           protein.
          Length = 401

 Score =  123 bits (296), Expect = 3e-28
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           ++KD+GL +AFRNIPG+E            APGGH+GRFVIWT+SAF RL+ LFG+WK P
Sbjct: 214 YDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKP 273

Query: 182 SKQKKNFNLPQPKMANTDLTRLLK 253
           S  KK +NLPQPKMANTDL+RLLK
Sbjct: 274 STLKKGYNLPQPKMANTDLSRLLK 297



 Score = 81.8 bits (193), Expect = 8e-16
 Identities = 39/69 (56%), Positives = 51/69 (73%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
           +EIRKVLR P KRV R+ R+LNPLTN + ++KLNPYA VLKR+A L   +R   K LA A
Sbjct: 299 EEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKA 358

Query: 436 EKSGLKLSK 462
           +K  ++L+K
Sbjct: 359 KKQNVELAK 367


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,306,536
Number of Sequences: 53049
Number of extensions: 544780
Number of successful extensions: 1637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)