Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30845
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    83   1e-16
AF125463-2|AAD12867.2|  167|Caenorhabditis elegans Hypothetical ...    30   1.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTP 181
           + +D    RAFRNIPGV+            APGGHLGR +IWT+SAF +LD ++G+    
Sbjct: 210 YGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVAN 269

Query: 182 SKQ-KKNFNLPQPKMANTDLTRLLK 253
           S Q KK +++P P MAN+D +R+++
Sbjct: 270 SSQLKKGWSVPLPIMANSDFSRIIR 294



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRR 405
           +E+ K +RAP K  +      NPL     + KLNPYA++L++ +   +++
Sbjct: 296 EEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKASKANVKK 345


>AF125463-2|AAD12867.2|  167|Caenorhabditis elegans Hypothetical
           protein Y49F6C.7 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +1

Query: 172 EDTIKTKEELQPAPTEDGQH*PHTSSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 351
           E+    +E  QPA T   +       Q+D  R+ +RA  +   R  R L  + N   +  
Sbjct: 5   EEHQNLEENYQPARTPRNELVAQIQVQLDINRQEIRAREREQARLLRDLREMDNRIRIEM 64

Query: 352 LNPYAAVLKRKAILEL 399
           +N  A VL+   +L L
Sbjct: 65  MNLRARVLEENPLLAL 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,999,829
Number of Sequences: 27780
Number of extensions: 256826
Number of successful extensions: 703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)