Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30845
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    92   4e-19
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    92   4e-19
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    32   0.31 
At2g35650.1 68415.m04372 glycosyl transferase family 2 protein s...    31   0.95 
At2g46180.1 68415.m05742 intracellular protein transport protein...    30   1.3  
At4g03940.1 68417.m00557 expressed protein                             29   2.9  
At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1) a...    28   5.1  
At5g04410.1 68418.m00433 no apical meristem (NAM) family protein...    28   6.7  
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    27   8.9  
At1g71360.1 68414.m08237 expressed protein low similarity to PIR...    27   8.9  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    27   8.9  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 39/77 (50%), Positives = 55/77 (71%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
           + +AFRN+PGVE            APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK 
Sbjct: 224 IVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKG 283

Query: 200 FNLPQPKMANTDLTRLL 250
           + LP+ KM N DL R++
Sbjct: 284 YVLPRAKMVNADLARII 300



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 26/76 (34%), Positives = 35/76 (46%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
           DE++ V+        RA  K NPL N   M KLNPYA   KR ++L    R   K     
Sbjct: 303 DEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLE 362

Query: 436 EKSGLKLSKRNPAMKA 483
           +K  +   +   A+KA
Sbjct: 363 KKRKVVTKEEAQAIKA 378


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 39/77 (50%), Positives = 55/77 (71%)
 Frame = +2

Query: 20  LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 199
           + +AFRN+PGVE            APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK 
Sbjct: 223 IVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKG 282

Query: 200 FNLPQPKMANTDLTRLL 250
           + LP+ KM N DL R++
Sbjct: 283 YVLPRAKMVNADLARII 299



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 30/76 (39%), Positives = 38/76 (50%)
 Frame = +1

Query: 256 DEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADA 435
           DEI+ V+    K   RA  K NPL N   MLKLNPYA   KR ++L   +R   K    A
Sbjct: 302 DEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLA 361

Query: 436 EKSGLKLSKRNPAMKA 483
           +K      +   A+KA
Sbjct: 362 KKRKTVTKEEALAIKA 377


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +3

Query: 162 SGHGRHHQNKRRTSTCPNRRWPTLTSHVFSS**DQEGPPCSQQTRDPCYTQIEPT 326
           S H  HH  K  T+T P    P    H+FSS  +   PP S    +P +   +PT
Sbjct: 57  SPHTHHHHKKHLTTTTP----PPHEKHLFSSVANPPPPPPSPPHPNPFFPSSDPT 107


>At2g35650.1 68415.m04372 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535; identical to cDNA for partial mRNA for
           glycosyltransferase (cslA07 gene) GI:28551963
          Length = 556

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 684 KSNLFIYALALSSSFRLIGLGFHGLFQLSASYL 586
           K+ L++Y L  S +F ++G GF G +  ++SYL
Sbjct: 523 KNTLYVYLLFQSVAFFVVGFGFVGKYVPASSYL 555


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/105 (18%), Positives = 43/105 (40%)
 Frame = +1

Query: 163 RVMEDTIKTKEELQPAPTEDGQH*PHTSSQVDEIRKVLRAPNKRVIRATRKLNPLTNNKA 342
           +  ++  + K+ L    TE+ +     S  +DE+R+       +++   + L     N+ 
Sbjct: 369 KARQELKRLKQHLLEKETEESEKMDEDSRLIDELRQTNEYQRSQILGLEKALRQTMANQE 428

Query: 343 MLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAM 477
            +K +    + K K I+E   +K    L   +   ++L     A+
Sbjct: 429 EIKSSSDLEIRKSKGIIEDLNQKLANCLRTIDSKNVELLNLQTAL 473


>At4g03940.1 68417.m00557 expressed protein 
          Length = 310

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 494 ARRDAEHQGGSRQETQEAGC*EDPASSQEEG 586
           +R+++  QGG    T+E+ C E+  S + EG
Sbjct: 55  SRKESSVQGGDESSTEESDCLEEVKSEKSEG 85


>At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1)
           annotation temporarily based on supporting cDNA
           gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1
           splice variant S and SWITCH1 splice variant L (SWI1)
           GI:16033413 and GI:16033410
          Length = 639

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 29/126 (23%), Positives = 53/126 (42%)
 Frame = +1

Query: 100 RPSWTFRHLDSVRIRQA*PLIRVMEDTIKTKEELQPAPTEDGQH*PHTSSQVDEIRKVLR 279
           R  +  RH+D+ + ++     RV ++  K +E  +    +DG     T  +  EI    R
Sbjct: 195 RVQYQSRHIDTRKNKEGEESSRVKDEVYKEEEMEKEEDDDDGNEIGGTKQEAKEITNGNR 254

Query: 280 APNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLS 459
              K +  +T +L          K      V KRK+  +   R +++    AE++ LK+ 
Sbjct: 255 -KRKLIESSTERLAQKAKVYDQ-KKETQIVVYKRKSERKFIDRWSVERYKLAERNMLKVM 312

Query: 460 KRNPAM 477
           K   A+
Sbjct: 313 KEKNAV 318


>At5g04410.1 68418.m00433 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein;
           supporting cDNA gi|6456750|gb|AF201456.1|AF201456
          Length = 567

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -1

Query: 690 LKKSNLFIYALALSSSFRLIGLGFHGLFQLSASYLPSSWEEAGSS*QPA 544
           LKK+ +   A  L   F+  G G     Q  A YL   WEE G +  PA
Sbjct: 141 LKKAGVPQEAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWEEDGMTYVPA 189


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 431 SARAFKFFLLRSSKIAFLFSTAA*GLSFSIALLLVSGFN 315
           S    KFFLL    + F F      L  SIA LL S F+
Sbjct: 423 SVIGLKFFLLNDFSLQFSFYFVYINLQISIAFLLSSAFS 461


>At1g71360.1 68414.m08237 expressed protein low similarity to
           PIR|JC7185 chromosome 1 C1orf9 protein [Homo sapiens]
          Length = 459

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/114 (19%), Positives = 49/114 (42%)
 Frame = +1

Query: 142 RQA*PLIRVMEDTIKTKEELQPAPTEDGQH*PHTSSQVDEIRKVLRAPNKRVIRATRKLN 321
           ++A P   V++D +  ++   P P E+ +H P +    D + K+L    + +  +   L 
Sbjct: 258 QEASPENAVVKDEVSLEKRKLPDPVEEIKHQPGSRMPGDTVLKILMQKIRSLDVSLSVLE 317

Query: 322 PLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKA 483
                +++     Y  + K   +   +R K ++ +   E  G+K  + N   +A
Sbjct: 318 SYLEERSL----KYGMIFKEMDLEASKREKEVETMR-LEVEGMKEREENTKKEA 366


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 609 FQLSASYLPSSWEEAGSS*QPASWVS 532
           ++LS +Y+PS +  +GSS    SWVS
Sbjct: 140 YRLSFAYIPSGFYPSGSSGGLVSWVS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,759,301
Number of Sequences: 28952
Number of extensions: 258025
Number of successful extensions: 696
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)