Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30844
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 64 1e-11
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 29 0.86
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.0
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 27 3.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 3.5
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.0
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 8.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.0
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 64.5 bits (150), Expect = 1e-11
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +2
Query: 272 HVGWYQSADVGNFLSLSL-LESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAI 448
HVGWY A V +FLS +E+QY YQ + S+ +YD +S+ G L ++AY+LTP+ +
Sbjct: 104 HVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFM 163
Query: 449 AMYKEGDYTPEALRN 493
A ++E +T +L +
Sbjct: 164 AAHEEKTWTASSLNS 178
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 21 PENEAT-IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFP 191
PE E+ I+ V+ + L VM I+KHC +S NM G L+G+ ++ L++++ F P
Sbjct: 10 PELESPPIERVELESLLVMNIIKHC-RDSFPNMGTI-GQLVGIDIDGVLQVSSSFESP 65
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 511 NLFIEVPIVIRNSPLTNIMISELTE 585
N+ E+PIVI NS L ++ L+E
Sbjct: 185 NVIRELPIVIHNSHLATCLLHSLSE 209
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = -1
Query: 302 LHLHSGTIQHENDQH*SSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLND 147
+ + + D H +++ VFL IH ++ W+WE V + ++ D
Sbjct: 947 IRVSESAFKMHKDGHNVKVVERYLRTVFLRIHFLISEWRWEDVAQILFLIFD 998
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 150 RPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSS 34
R N +LP PP ++ +++ LF+S+ H+ + S
Sbjct: 768 RSNSAKLPYVPPSLTSLIDNAIQLFASMFCHQPPKVMES 806
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +2
Query: 236 DEEASKINVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLT 415
+E KIN + VGWY + G L S LE + I V+VI D K + G T
Sbjct: 86 NEMFKKINANEKLVGWYHT---GPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPT 142
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 356 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 508
+ + +VV YD K + F L+A TP+ E TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -1
Query: 353 RSDSDIVTLITKGLENCLHLHSGTIQHENDQH*SSKPPHHVQLVFLLIHGVVMLWKWEAV 174
RSD D T+ T+G + CLH +G + Q K P ++ L G L + AV
Sbjct: 95 RSDVD-PTITTRGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDL--QGQTPLHRAAAV 151
Query: 173 GNLQTV 156
G +Q V
Sbjct: 152 GKIQVV 157
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 174 W*SPDGSQRPNQGELPEPPP 115
W + DGS NQ P PPP
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPP 1887
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 619 WIWVLHLFSKGQLSQSSWERV 681
W+W + K +LS SSW+ V
Sbjct: 240 WVWCTYDELKNKLSPSSWDSV 260
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -1
Query: 473 CNRLPCT*Q*PEV---SNDRPSKSRILWLISL 387
CN + C Q + SN +P +R+LWL+S+
Sbjct: 2947 CNAVSCFLQASSLLSSSNSKPLLTRVLWLLSV 2978
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,241
Number of Sequences: 5004
Number of extensions: 67198
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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