Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30844
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 74 1e-13
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 30 2.1
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497... 29 2.7
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 29 3.6
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 4.8
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 29 4.8
02_03_0085 + 15063444-15063889,15064324-15065311 29 4.8
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 29 4.8
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 6.3
05_01_0240 - 1791138-1791470 28 8.3
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 28 8.3
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/86 (38%), Positives = 54/86 (62%)
Frame = +2
Query: 251 KINVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYR 430
++NVD+ VGWYQS +G+F ++ L+E+ +YQ +I V ++YD +S +G L LKA +
Sbjct: 104 EVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCVCIVYDPSRSNQGVLALKALK 163
Query: 431 LTPQAIAMYKEGDYTPEALRNLKIGY 508
LT + +Y+ T E LR K+ +
Sbjct: 164 LTDSFMDLYRNNGLTGEKLREKKLSW 189
Score = 61.3 bits (142), Expect = 7e-10
Identities = 32/65 (49%), Positives = 44/65 (67%)
Frame = +3
Query: 24 ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 203
E + ++ VQ +GLAV+KI+KHC E + + + G LLGL V + LE+TNCFPFP +D
Sbjct: 27 EAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPMRED 83
Query: 204 TMDEE 218
DEE
Sbjct: 84 --DEE 86
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 36 TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMD 212
T++ V L ++ IV H + + + G LLG +++TN + P +D D
Sbjct: 13 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKD 71
>07_01_0662 +
4972953-4973645,4973758-4974046,4974790-4974803,
4974848-4974856
Length = 334
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 165 PDGSQRPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSSLHF 25
P G P QG + PPP + +S F SLP+H+ + G ++H+
Sbjct: 207 PPGYIEPPQGYIEPPPPEPTLARIESTESF-SLPLHKVD--GRAIHY 250
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 606 DPSFLDLGTASVLEGTTFAV--FMGTCLM 686
D S LDL TAS L +TF+V F+GT L+
Sbjct: 718 DQSVLDLETASTLSESTFSVMQFLGTILI 746
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 275 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 430
VGWY+S + G + S +S +H ++ +++V D KSA G T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = -3
Query: 264 STLIFEASSSCPTGIPPHPWC-RHALEMGSSW*SPDGSQRPNQGELPEPPPC 112
+ L+ E P PHP R E G P+G RP PP C
Sbjct: 1140 AALVVERDEDDPRSAHPHPVSTRPGREQGGEAPEPNGGPRPPTAGAGPPPAC 1191
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = -3
Query: 246 ASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPCCCMILHDSVSLFSSL 67
+SS PT P H W R G P S G E C +I+ +V+L +L
Sbjct: 31 SSSRLPTTTPLHHWPRRRRSRGLP-PPPPPSPHSTAGPAGE---FCKIIIVPTVAL--AL 84
Query: 66 PVHRTEHIGSSLHFQ 22
P HR H G+++ Q
Sbjct: 85 PSHRIAHHGTAIEQQ 99
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = -3
Query: 264 STLIFEASSSCPTGIPPHPWC-RHALEMGSSW*SPDGSQRPNQGELPEPPPC 112
+ L+ E P PHP R E G P+G RP PP C
Sbjct: 1132 AALVVERDEDDPRSAHPHPVSTRPGREQGGEAPEPNGGPRPPTAGAGPPPAC 1183
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 116 GGGSGSSPWFGR*EPSGDYQLLP 184
GGG GS WF R SG LLP
Sbjct: 47 GGGGGSGGWFSRLVASGASLLLP 69
>05_01_0240 - 1791138-1791470
Length = 110
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Frame = +1
Query: 94 MKNHA-ATWRW-----LRELSLVWSLRTVWRL 171
M+ HA WRW LR L W R VWRL
Sbjct: 24 MQQHADGQWRWRPGLCLRRFRLRWLRRAVWRL 55
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 94 MKNHAATWRWLRELSLVWSLRTVWRLPTASHFQSMTTPWMRRNTS 228
M N + TWR +++ V +WR+ S PW+ R S
Sbjct: 9 MSNVSYTWRSIQKGLTVLQNGMIWRVGNGSKINIWADPWIPRGWS 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,491,383
Number of Sequences: 37544
Number of extensions: 466473
Number of successful extensions: 1199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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