BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30844 (704 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15 SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8 SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08) 29 3.7 SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 29 4.9 SB_54964| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4 SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5 >SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 425 Score = 79.0 bits (186), Expect = 3e-15 Identities = 37/72 (51%), Positives = 50/72 (69%) Frame = +3 Query: 6 SARRAPENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFP 185 S++ +P + I VQ DGL V+KI+KHC EE S ++ QG LLGL+ +NRLEITNCFP Sbjct: 6 SSKNSPSGQ--IDIVQVDGLTVLKIIKHCEEEGSSG-DLVQGVLLGLIQDNRLEITNCFP 62 Query: 186 FPKHDDTMDEEE 221 FP + DE++ Sbjct: 63 FPSNKAGDDEDD 74 Score = 57.6 bits (133), Expect = 9e-09 Identities = 21/38 (55%), Positives = 32/38 (84%) Frame = +2 Query: 254 INVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEES 367 +N+DH HVGWYQS +G++++ +LL+SQY YQ SIE++ Sbjct: 90 VNIDHLHVGWYQSTYLGSYINRTLLDSQYSYQKSIEDA 127 Score = 37.9 bits (84), Expect = 0.008 Identities = 14/42 (33%), Positives = 29/42 (69%) Frame = +2 Query: 383 DTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 508 D ++++G LTLKA+RL+ + + +YK+G+++ + L I + Sbjct: 195 DPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISF 236 Score = 33.9 bits (74), Expect = 0.13 Identities = 13/28 (46%), Positives = 21/28 (75%) Frame = +1 Query: 511 NLFIEVPIVIRNSPLTNIMISELTEMIP 594 ++F E+P+VI+NS L N+++ EL E P Sbjct: 238 SMFQEIPLVIKNSSLMNVLLCELDENTP 265 >SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3066 Score = 29.5 bits (63), Expect = 2.8 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -1 Query: 254 SSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHL 117 S + PH V L + + +W V NL + ++ KES L HL Sbjct: 1931 SHETPHVVMEFLLSLQQYELAAEWAEVENLPSEIHQTIKESQLKHL 1976 >SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08) Length = 415 Score = 29.1 bits (62), Expect = 3.7 Identities = 21/78 (26%), Positives = 39/78 (50%) Frame = +1 Query: 442 GYCYVQGRRLHSGSTT*PEDWL*NLFIEVPIVIRNSPLTNIMISELTEMIPEEEGIQVFW 621 GYC++ + H G++ + VP+ NSPL I +++ + ++P+ + W Sbjct: 12 GYCHISDKNQHEGNSDINHN---KAKYAVPLT-DNSPLA-IPLTDNSPLVPKGTKPIILW 66 Query: 622 IWVLHLFSKGQLSQSSWE 675 W H+F + SQ+S E Sbjct: 67 -WTEHIFPHDK-SQTSHE 82 >SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) Length = 1420 Score = 28.7 bits (61), Expect = 4.9 Identities = 23/86 (26%), Positives = 36/86 (41%) Frame = +1 Query: 361 GECCCDLRYKEISQRILDFEGLSFDTSGYCYVQGRRLHSGSTT*PEDWL*NLFIEVPIVI 540 G+ CCDLR E L+ C+ ++ ST P+ +LF++ V+ Sbjct: 78 GKTCCDLRQLEALDSNLNTLRQFTSRCPACWQNMLDMYCESTCSPDQ---SLFMDPTSVV 134 Query: 541 RNSPLTNIMISELTEMIPEEEGIQVF 618 P T MI+ + I E Q+F Sbjct: 135 GFPPYTPYMINAINYYIAPEHKDQLF 160 Score = 28.7 bits (61), Expect = 4.9 Identities = 23/86 (26%), Positives = 36/86 (41%) Frame = +1 Query: 361 GECCCDLRYKEISQRILDFEGLSFDTSGYCYVQGRRLHSGSTT*PEDWL*NLFIEVPIVI 540 G+ CCDLR E L+ C+ ++ ST P+ +LF++ V+ Sbjct: 298 GKTCCDLRQLEALDSNLNTLRQFTSRCPACWQNMLDMYCESTCSPDQ---SLFMDPTSVV 354 Query: 541 RNSPLTNIMISELTEMIPEEEGIQVF 618 P T MI+ + I E Q+F Sbjct: 355 GFPPYTPYMINAINYYIAPEHKDQLF 380 >SB_54964| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 138 Score = 28.3 bits (60), Expect = 6.4 Identities = 22/79 (27%), Positives = 36/79 (45%) Frame = +2 Query: 305 NFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEA 484 +FLS+ + +H +++E VV IYD FL K Y+ T + K + Sbjct: 12 SFLSVIPEQGPFHVFLNLQEDVVKIYD-------FLFKKVYKETFGSDLPNKPKPFRVSL 64 Query: 485 LRNLKIGYKIYSLKCQLLS 541 R LK G Y+ Q+++ Sbjct: 65 KRKLKSGIVCYAASFQVMT 83 >SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 322 Score = 27.9 bits (59), Expect = 8.5 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +3 Query: 21 PENEATIQYVQCDGLAVMKIVKHCHEES-CSNMEVAQGALLGLVVENRLEITNCFPFPKH 197 P + I V + ++ +V H + + + G LLG + L++ NCF P Sbjct: 2 PGPDEAITTVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFD 61 Query: 198 DDTMDE 215 +D D+ Sbjct: 62 EDDRDQ 67 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,179,945 Number of Sequences: 59808 Number of extensions: 509507 Number of successful extensions: 1224 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1089 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1218 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1853669818 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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