Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30844
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   3e-15
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08)       29   3.7  
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)                29   4.9  
SB_54964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 37/72 (51%), Positives = 50/72 (69%)
 Frame = +3

Query: 6   SARRAPENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFP 185
           S++ +P  +  I  VQ DGL V+KI+KHC EE  S  ++ QG LLGL+ +NRLEITNCFP
Sbjct: 6   SSKNSPSGQ--IDIVQVDGLTVLKIIKHCEEEGSSG-DLVQGVLLGLIQDNRLEITNCFP 62

Query: 186 FPKHDDTMDEEE 221
           FP +    DE++
Sbjct: 63  FPSNKAGDDEDD 74



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 21/38 (55%), Positives = 32/38 (84%)
 Frame = +2

Query: 254 INVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEES 367
           +N+DH HVGWYQS  +G++++ +LL+SQY YQ SIE++
Sbjct: 90  VNIDHLHVGWYQSTYLGSYINRTLLDSQYSYQKSIEDA 127



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 14/42 (33%), Positives = 29/42 (69%)
 Frame = +2

Query: 383 DTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 508
           D  ++++G LTLKA+RL+ + + +YK+G+++ + L    I +
Sbjct: 195 DPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISF 236



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +1

Query: 511 NLFIEVPIVIRNSPLTNIMISELTEMIP 594
           ++F E+P+VI+NS L N+++ EL E  P
Sbjct: 238 SMFQEIPLVIKNSSLMNVLLCELDENTP 265


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 254  SSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHL 117
            S + PH V    L +    +  +W  V NL + ++   KES L HL
Sbjct: 1931 SHETPHVVMEFLLSLQQYELAAEWAEVENLPSEIHQTIKESQLKHL 1976


>SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08)
          Length = 415

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = +1

Query: 442 GYCYVQGRRLHSGSTT*PEDWL*NLFIEVPIVIRNSPLTNIMISELTEMIPEEEGIQVFW 621
           GYC++  +  H G++    +        VP+   NSPL  I +++ + ++P+     + W
Sbjct: 12  GYCHISDKNQHEGNSDINHN---KAKYAVPLT-DNSPLA-IPLTDNSPLVPKGTKPIILW 66

Query: 622 IWVLHLFSKGQLSQSSWE 675
            W  H+F   + SQ+S E
Sbjct: 67  -WTEHIFPHDK-SQTSHE 82


>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
          Length = 1420

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/86 (26%), Positives = 36/86 (41%)
 Frame = +1

Query: 361 GECCCDLRYKEISQRILDFEGLSFDTSGYCYVQGRRLHSGSTT*PEDWL*NLFIEVPIVI 540
           G+ CCDLR  E     L+           C+     ++  ST  P+    +LF++   V+
Sbjct: 78  GKTCCDLRQLEALDSNLNTLRQFTSRCPACWQNMLDMYCESTCSPDQ---SLFMDPTSVV 134

Query: 541 RNSPLTNIMISELTEMIPEEEGIQVF 618
              P T  MI+ +   I  E   Q+F
Sbjct: 135 GFPPYTPYMINAINYYIAPEHKDQLF 160



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/86 (26%), Positives = 36/86 (41%)
 Frame = +1

Query: 361 GECCCDLRYKEISQRILDFEGLSFDTSGYCYVQGRRLHSGSTT*PEDWL*NLFIEVPIVI 540
           G+ CCDLR  E     L+           C+     ++  ST  P+    +LF++   V+
Sbjct: 298 GKTCCDLRQLEALDSNLNTLRQFTSRCPACWQNMLDMYCESTCSPDQ---SLFMDPTSVV 354

Query: 541 RNSPLTNIMISELTEMIPEEEGIQVF 618
              P T  MI+ +   I  E   Q+F
Sbjct: 355 GFPPYTPYMINAINYYIAPEHKDQLF 380


>SB_54964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +2

Query: 305 NFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEA 484
           +FLS+   +  +H   +++E VV IYD       FL  K Y+ T  +    K   +    
Sbjct: 12  SFLSVIPEQGPFHVFLNLQEDVVKIYD-------FLFKKVYKETFGSDLPNKPKPFRVSL 64

Query: 485 LRNLKIGYKIYSLKCQLLS 541
            R LK G   Y+   Q+++
Sbjct: 65  KRKLKSGIVCYAASFQVMT 83


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 21  PENEATIQYVQCDGLAVMKIVKHCHEES-CSNMEVAQGALLGLVVENRLEITNCFPFPKH 197
           P  +  I  V    + ++ +V H +      + +   G LLG   +  L++ NCF  P  
Sbjct: 2   PGPDEAITTVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFD 61

Query: 198 DDTMDE 215
           +D  D+
Sbjct: 62  EDDRDQ 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,179,945
Number of Sequences: 59808
Number of extensions: 509507
Number of successful extensions: 1224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)