Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30844
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 65 5e-11
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 31 0.61
U23172-18|ABC48253.1| 915|Caenorhabditis elegans Hypothetical p... 29 2.4
U23172-17|ABC48254.1| 923|Caenorhabditis elegans Hypothetical p... 29 2.4
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 5.7
Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z83231-5|CAB05753.1| 239|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81514-6|CAB62802.1| 712|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z54342-4|CAA91150.1| 447|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL023847-9|CAA19553.1| 239|Caenorhabditis elegans Hypothetical ... 28 7.5
Z81110-4|CAB03256.1| 381|Caenorhabditis elegans Hypothetical pr... 27 9.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 9.9
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 9.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 9.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 9.9
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 9.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 9.9
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/86 (37%), Positives = 54/86 (62%)
Frame = +2
Query: 254 INVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRL 433
+N+D+ VG+YQS G S L+ES + YQ E+VV+IYD K+ +G L+L+A+RL
Sbjct: 103 MNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRL 162
Query: 434 TPQAIAMYKEGDYTPEALRNLKIGYK 511
+ A+ + + D+ PE ++ + Y+
Sbjct: 163 STAALDLASKNDWRPELVKAAGLTYQ 188
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Frame = +3
Query: 36 TIQYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLEITNCFPFPK 194
+++++ D L VMKIVKH E + + + G L GLV ++RLEITNCFP +
Sbjct: 11 SVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVR 70
Query: 195 HDDTMDEE 218
++ MD++
Sbjct: 71 NEPVMDDD 78
Score = 31.9 bits (69), Expect = 0.46
Identities = 12/24 (50%), Positives = 21/24 (87%)
Frame = +1
Query: 511 NLFIEVPIVIRNSPLTNIMISELT 582
N+F E+PI+I++S L N+++SEL+
Sbjct: 189 NMFEELPIIIKSSYLNNVLMSELS 212
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 350 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTPEALRNLKIGYKIYSL 523
T+I ES I+ T+ S LTL + + TP A IA E + TP+ ++ + ++ L
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQEREL 534
Query: 524 KCQLLSGTLH 553
++S T++
Sbjct: 535 PVSMMSTTVN 544
>U23172-18|ABC48253.1| 915|Caenorhabditis elegans Hypothetical
protein F25B5.1a protein.
Length = 915
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 383 DTKKSARGFLTLKAYRLTPQAIAMYK--EGDYTPEALRNLKIGYKIYSLKCQLLSGTL 550
DT+K R + + L+ + +A + EGD T + LKI +K S++C+ +S L
Sbjct: 240 DTEKQRREDMLTTSKSLSDKLVAEEEVVEGDTTNDDFAKLKIEFKNQSIRCERVSQRL 297
>U23172-17|ABC48254.1| 923|Caenorhabditis elegans Hypothetical
protein F25B5.1b protein.
Length = 923
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 383 DTKKSARGFLTLKAYRLTPQAIAMYK--EGDYTPEALRNLKIGYKIYSLKCQLLSGTL 550
DT+K R + + L+ + +A + EGD T + LKI +K S++C+ +S L
Sbjct: 240 DTEKQRREDMLTTSKSLSDKLVAEEEVVEGDTTNDDFAKLKIEFKNQSIRCERVSQRL 297
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 108 SNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEE 218
+ E G L+G + +++TNCF P ++ D E
Sbjct: 32 TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLE 68
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Frame = +3
Query: 51 QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEITNCFPF 188
QCD AV+K +K EE CS N+E +A+ G +V ++ +++TNC F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575
>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical
protein F55B11.1 protein.
Length = 1358
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 233 HDEEASKINVDHFHVGWYQSADVGNFLSL 319
H E+ DH H WYQ + LSL
Sbjct: 247 HGYESMSFAYDHHHTKWYQPVSYDDLLSL 275
>Z83231-5|CAB05753.1| 239|Caenorhabditis elegans Hypothetical
protein Y57A10C.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -1
Query: 236 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 66
H V+LL + + W V +Q T+ S+L ++A FF+ +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164
>Z81514-6|CAB62802.1| 712|Caenorhabditis elegans Hypothetical
protein F26F2.7 protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 532 IVIRNSPLTNIMISELTEMIPE---EEGIQVFWIWVLHLF 642
++IRN N I TEMIP+ G + F W+ H F
Sbjct: 387 VMIRNMTAVNWNIDSFTEMIPDIIMVVGCEYFVDWLKHAF 426
>Z54342-4|CAA91150.1| 447|Caenorhabditis elegans Hypothetical
protein C08H9.7 protein.
Length = 447
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 535 VIRNSPLTNIMISELTEMIPEEE--GIQVFWIWVLH 636
++ N ++ I + + E+ GI++FW+W H
Sbjct: 179 IMSNEASRSVFIKSIVSFVKNEDIDGIEIFWMWPKH 214
>Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical
protein T07A5.1 protein.
Length = 379
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +3
Query: 24 ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 203
EN+ + Y+Q D ++K+ + S N+ + L L + R EI C H +
Sbjct: 113 ENKTSNDYLQFDTQPARAVLKNFNTFSIGNLHIPSNIPLFLKMWERSEIRGCLNLIVHRN 172
Query: 204 TMDEEEY 224
+++
Sbjct: 173 MTKSQQF 179
>AL023847-9|CAA19553.1| 239|Caenorhabditis elegans Hypothetical
protein Y57A10C.1 protein.
Length = 239
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -1
Query: 236 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 66
H V+LL + + W V +Q T+ S+L ++A FF+ +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164
>Z81110-4|CAB03256.1| 381|Caenorhabditis elegans Hypothetical
protein T01D3.5 protein.
Length = 381
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 278 QHENDQH*SSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL 126
+HE QH S H Q+ + L+ G V++ + +G++ ND+ S +
Sbjct: 158 EHEEKQH--SHGNIHAQIGYSLVLGFVLMLLVDQIGSVTVARNDRAGRSRI 206
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 18 APENEATIQYVQCD 59
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 18 APENEATIQYVQCD 59
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 18 APENEATIQYVQCD 59
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 18 APENEATIQYVQCD 59
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 18 APENEATIQYVQCD 59
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 18 APENEATIQYVQCD 59
APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,711
Number of Sequences: 27780
Number of extensions: 389150
Number of successful extensions: 958
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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