Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30844
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 626 GYCICSRRDNFRSLHGNVFDELESR 700
           G CI SRR+   ++H   F  ++ R
Sbjct: 49  GQCISSRRNGRHNVHSLAFGAIQLR 73


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +2

Query: 350 TSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRN 493
           TS +   V+ Y   KS +GF     +   P+   +       P  LRN
Sbjct: 163 TSSQNIAVIEYRIPKSGKGFSLFARFLKNPRPCNVLATSLTEPYTLRN 210


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 225 GIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPC 112
           G+ PH   R     GS+    D   R +  + P+PP C
Sbjct: 534 GLCPH---RRRANSGSTSSGDDELHRASLSKTPQPPQC 568


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 83  HYFHHCQSIALNILDRRFI 27
           H++HHC  I   I   RFI
Sbjct: 471 HHWHHCPEIYKAIEGIRFI 489


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 147 PNQGELPEPPPCCCMILHDSVS 82
           P    +P+P P  C ++  SVS
Sbjct: 582 PKLKGIPDPXPNTCKVIASSVS 603


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 409 ESSG*FLCIVNHN 371
           E SG +LCIVN++
Sbjct: 280 EDSGKYLCIVNNS 292


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/68 (20%), Positives = 23/68 (33%)
 Frame = -1

Query: 431 NDRPSKSRILWLISLYRKSQQHSPQ*RSDSDIVTLITKGLENCLHLHSGTIQHENDQH*S 252
           N  PS   +     L   +  H        D   L+   + + +H     +Q +  QH S
Sbjct: 129 NGHPSTPIVYASCKLQAAAVDHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQS 188

Query: 251 SKPPHHVQ 228
                H+Q
Sbjct: 189 QAQQQHLQ 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,303
Number of Sequences: 438
Number of extensions: 4397
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)