Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30844
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10840.2 68414.m01245 eukaryotic translation initiation facto...    73   2e-13
At1g10840.1 68414.m01246 eukaryotic translation initiation facto...    73   2e-13
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    30   1.7  
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    30   1.7  
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ...    29   4.0  
At1g11330.1 68414.m01301 S-locus lectin protein kinase family pr...    27   9.2  

>At1g10840.2 68414.m01245 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 250

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 32/80 (40%), Positives = 54/80 (67%)
 Frame = +2

Query: 251 KINVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYR 430
           ++NVD+  VGWYQS  +G++ ++ L+E+  +YQ +I+  V +IYD  K+  G L LKA +
Sbjct: 7   EVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALK 66

Query: 431 LTPQAIAMYKEGDYTPEALR 490
           L+   + +Y+ G++T E LR
Sbjct: 67  LSDSFMELYRGGNFTGEKLR 86


>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 337

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 32/80 (40%), Positives = 54/80 (67%)
 Frame = +2

Query: 251 KINVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYR 430
           ++NVD+  VGWYQS  +G++ ++ L+E+  +YQ +I+  V +IYD  K+  G L LKA +
Sbjct: 94  EVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALK 153

Query: 431 LTPQAIAMYKEGDYTPEALR 490
           L+   + +Y+ G++T E LR
Sbjct: 154 LSDSFMELYRGGNFTGEKLR 173



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 33/60 (55%), Positives = 42/60 (70%)
 Frame = +3

Query: 39  IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEE 218
           ++ VQ +GLAV+KI+KHC E S +   +  G LLGL V + LE+TNCFPFP  DD  DEE
Sbjct: 22  LRVVQIEGLAVLKIIKHCKEFSPT---LVTGQLLGLDVGSVLEVTNCFPFPVRDD--DEE 76


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 36  TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMD 212
           TI+ V    L ++ IV H +  +  + +   G LLG      +++TN +  P  +D  D
Sbjct: 13  TIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKD 71


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 36  TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMD 212
           TI+ V    L ++ IV H +  +    +   G LLG      +++TN +  P  +D  D
Sbjct: 13  TIEKVIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKD 71


>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
           thaliana] GI:17225050
          Length = 664

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 271 SCWMVPECRCRQFSKPFVIRV-TISLSDLY*GECCCDLRYKEISQRILDFEGLSFDTSGY 447
           S W V + RC   S+P +       L   +  + CCD  YKEI   +L  +   FD   +
Sbjct: 477 SDWWVLDVRCGSRSEPVIHDGHRHPLYYEHKKDHCCDACYKEIDGYLLSCDTCDFDLDLH 536

Query: 448 C 450
           C
Sbjct: 537 C 537


>At1g11330.1 68414.m01301 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 840

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -1

Query: 440 EVSNDRPSKSRILWLIS 390
           EV+NDRP+ S ++W+++
Sbjct: 778 EVANDRPNVSNVIWMLT 794


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,447,138
Number of Sequences: 28952
Number of extensions: 368756
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)