BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30843 (553 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.60 SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.80 SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 28 0.80 SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 1.1 SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 27 1.8 SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 3.2 SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 7.4 SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 9.8 SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.8 >SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1085 Score = 28.7 bits (61), Expect = 0.60 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = -3 Query: 494 VKSFKRRYPELKRRSIVGDEKDYVLAKRLATE---ALCDL-GITAVDASEVLDIMLSDYP 327 ++ F E +RRS+V EK+ VL K + C + G + E L+++ Y Sbjct: 262 IREFWLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRKRLAIEEELEVLYDAYY 321 Query: 326 HKYEEYRAYQRERQLTE 276 + E+Y QR TE Sbjct: 322 EELEQYANIQRNLANTE 338 >SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 536 Score = 28.3 bits (60), Expect = 0.80 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +1 Query: 313 SSYLCG*SDSMISKTSLASTAVIPKSHRASVANLFAKT*SFSSPTMDLRFSS 468 SS + S S + TSL+S++VIP S + +++ A S SS + L SS Sbjct: 19 SSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSS 70 >SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 548 Score = 28.3 bits (60), Expect = 0.80 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -3 Query: 356 VLDIMLSDYPHKYEEYRA-YQRERQLTEPEEIVTE*RWKI 240 VL + + P ++E A Y R+ E EEI+ E RW I Sbjct: 472 VLKLFMDINPSLFDEVDAEYSESRRKKEDEEIIREERWTI 511 >SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 282 Score = 27.9 bits (59), Expect = 1.1 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -3 Query: 350 DIMLSDYPHKYEEYRAYQRERQLTEPEEIVTE*RWKI 240 ++++ DYPHK R +R R T ++I+ RW + Sbjct: 113 ELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTV 149 >SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 783 Score = 27.1 bits (57), Expect = 1.8 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%) Frame = -3 Query: 449 IVGDEKDYVLAKRLATEAL-CDLGITAVDASEVLDIMLSDYPH--KYEEYRAYQRERQ-- 285 I+ D+ + ++ +A E + D T DA + + LS+ +YEEYR Q+E Q Sbjct: 412 IIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEE 471 Query: 284 LTEPEEI 264 L P+E+ Sbjct: 472 LEFPDEV 478 >SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces pombe|chr 1|||Manual Length = 386 Score = 26.2 bits (55), Expect = 3.2 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -3 Query: 449 IVGDEKDYVLAKRLATEALCDLGIT--AVDASEVLDIMLSDYPHKYEEYRAYQRERQLTE 276 +V K KR A AL + ++ A+ +E L ++ + EEY + ER+L + Sbjct: 264 LVSSSKSKSKTKRKARTALSSVSMSSSALFRNEGLTLLDDRFDKVEEEYTPIKDERELID 323 Query: 275 PEE 267 P++ Sbjct: 324 PDQ 326 >SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Schizosaccharomyces pombe|chr 3|||Manual Length = 791 Score = 25.0 bits (52), Expect = 7.4 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +3 Query: 219 LHHFLSVYLPSSFSYYLFWFSELSFPLVCTIFLILMW 329 L +F V++ +SF +Y WF +L FP + ++ + W Sbjct: 271 LRYFFIVFV-ASFIWY--WFPDLIFPALSSLGAWISW 304 >SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pombe|chr 2|||Manual Length = 574 Score = 24.6 bits (51), Expect = 9.8 Identities = 20/56 (35%), Positives = 22/56 (39%) Frame = +3 Query: 84 HAAAGVLAHVPTRWPTLSLQPPYPVSTSQGRF*VLPVCDQKIFLILHHFLSVYLPS 251 HA AGV RWP L L T Q DQ +L H L+V PS Sbjct: 79 HAMAGVFNSKTNRWPLLLLAG--SSETFQQNCGAFQELDQVSYLSPHTKLAVRPPS 132 >SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 217 Score = 24.6 bits (51), Expect = 9.8 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 213 LILHHFLSVYLPSSFSYYLFWFSELSFPLVCTI 311 +IL H L ++ S++ +FS LSFPL+ I Sbjct: 164 IILSHSL-FHISHLISFHFLFFSFLSFPLLSFI 195 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,044,967 Number of Sequences: 5004 Number of extensions: 38601 Number of successful extensions: 115 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 115 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 229961028 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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