Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30843
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.60
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.80
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 28 0.80
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 1.1
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 27 1.8
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 3.2
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 7.4
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 9.8
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.8
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.60
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = -3
Query: 494 VKSFKRRYPELKRRSIVGDEKDYVLAKRLATE---ALCDL-GITAVDASEVLDIMLSDYP 327
++ F E +RRS+V EK+ VL K + C + G + E L+++ Y
Sbjct: 262 IREFWLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRKRLAIEEELEVLYDAYY 321
Query: 326 HKYEEYRAYQRERQLTE 276
+ E+Y QR TE
Sbjct: 322 EELEQYANIQRNLANTE 338
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 28.3 bits (60), Expect = 0.80
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 313 SSYLCG*SDSMISKTSLASTAVIPKSHRASVANLFAKT*SFSSPTMDLRFSS 468
SS + S S + TSL+S++VIP S + +++ A S SS + L SS
Sbjct: 19 SSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSS 70
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 28.3 bits (60), Expect = 0.80
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 356 VLDIMLSDYPHKYEEYRA-YQRERQLTEPEEIVTE*RWKI 240
VL + + P ++E A Y R+ E EEI+ E RW I
Sbjct: 472 VLKLFMDINPSLFDEVDAEYSESRRKKEDEEIIREERWTI 511
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 350 DIMLSDYPHKYEEYRAYQRERQLTEPEEIVTE*RWKI 240
++++ DYPHK R +R R T ++I+ RW +
Sbjct: 113 ELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTV 149
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -3
Query: 449 IVGDEKDYVLAKRLATEAL-CDLGITAVDASEVLDIMLSDYPH--KYEEYRAYQRERQ-- 285
I+ D+ + ++ +A E + D T DA + + LS+ +YEEYR Q+E Q
Sbjct: 412 IIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEE 471
Query: 284 LTEPEEI 264
L P+E+
Sbjct: 472 LEFPDEV 478
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 449 IVGDEKDYVLAKRLATEALCDLGIT--AVDASEVLDIMLSDYPHKYEEYRAYQRERQLTE 276
+V K KR A AL + ++ A+ +E L ++ + EEY + ER+L +
Sbjct: 264 LVSSSKSKSKTKRKARTALSSVSMSSSALFRNEGLTLLDDRFDKVEEEYTPIKDERELID 323
Query: 275 PEE 267
P++
Sbjct: 324 PDQ 326
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 219 LHHFLSVYLPSSFSYYLFWFSELSFPLVCTIFLILMW 329
L +F V++ +SF +Y WF +L FP + ++ + W
Sbjct: 271 LRYFFIVFV-ASFIWY--WFPDLIFPALSSLGAWISW 304
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.8
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = +3
Query: 84 HAAAGVLAHVPTRWPTLSLQPPYPVSTSQGRF*VLPVCDQKIFLILHHFLSVYLPS 251
HA AGV RWP L L T Q DQ +L H L+V PS
Sbjct: 79 HAMAGVFNSKTNRWPLLLLAG--SSETFQQNCGAFQELDQVSYLSPHTKLAVRPPS 132
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 213 LILHHFLSVYLPSSFSYYLFWFSELSFPLVCTI 311
+IL H L ++ S++ +FS LSFPL+ I
Sbjct: 164 IILSHSL-FHISHLISFHFLFFSFLSFPLLSFI 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,967
Number of Sequences: 5004
Number of extensions: 38601
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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