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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30843
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    29   0.60 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.80 
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    28   0.80 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   1.1  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   1.8  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    26   3.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   7.4  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   9.8  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -3

Query: 494 VKSFKRRYPELKRRSIVGDEKDYVLAKRLATE---ALCDL-GITAVDASEVLDIMLSDYP 327
           ++ F     E +RRS+V  EK+ VL K    +     C + G   +   E L+++   Y 
Sbjct: 262 IREFWLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRKRLAIEEELEVLYDAYY 321

Query: 326 HKYEEYRAYQRERQLTE 276
            + E+Y   QR    TE
Sbjct: 322 EELEQYANIQRNLANTE 338


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 313 SSYLCG*SDSMISKTSLASTAVIPKSHRASVANLFAKT*SFSSPTMDLRFSS 468
           SS +   S S  + TSL+S++VIP S  + +++  A   S SS +  L  SS
Sbjct: 19  SSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSS 70


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 356 VLDIMLSDYPHKYEEYRA-YQRERQLTEPEEIVTE*RWKI 240
           VL + +   P  ++E  A Y   R+  E EEI+ E RW I
Sbjct: 472 VLKLFMDINPSLFDEVDAEYSESRRKKEDEEIIREERWTI 511


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 350 DIMLSDYPHKYEEYRAYQRERQLTEPEEIVTE*RWKI 240
           ++++ DYPHK    R  +R R  T  ++I+   RW +
Sbjct: 113 ELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTV 149


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -3

Query: 449 IVGDEKDYVLAKRLATEAL-CDLGITAVDASEVLDIMLSDYPH--KYEEYRAYQRERQ-- 285
           I+ D+ +  ++  +A E +  D   T  DA   + + LS+     +YEEYR  Q+E Q  
Sbjct: 412 IIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEE 471

Query: 284 LTEPEEI 264
           L  P+E+
Sbjct: 472 LEFPDEV 478


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 449 IVGDEKDYVLAKRLATEALCDLGIT--AVDASEVLDIMLSDYPHKYEEYRAYQRERQLTE 276
           +V   K     KR A  AL  + ++  A+  +E L ++   +    EEY   + ER+L +
Sbjct: 264 LVSSSKSKSKTKRKARTALSSVSMSSSALFRNEGLTLLDDRFDKVEEEYTPIKDERELID 323

Query: 275 PEE 267
           P++
Sbjct: 324 PDQ 326


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 219 LHHFLSVYLPSSFSYYLFWFSELSFPLVCTIFLILMW 329
           L +F  V++ +SF +Y  WF +L FP + ++   + W
Sbjct: 271 LRYFFIVFV-ASFIWY--WFPDLIFPALSSLGAWISW 304


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = +3

Query: 84  HAAAGVLAHVPTRWPTLSLQPPYPVSTSQGRF*VLPVCDQKIFLILHHFLSVYLPS 251
           HA AGV      RWP L L       T Q         DQ  +L  H  L+V  PS
Sbjct: 79  HAMAGVFNSKTNRWPLLLLAG--SSETFQQNCGAFQELDQVSYLSPHTKLAVRPPS 132


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 213 LILHHFLSVYLPSSFSYYLFWFSELSFPLVCTI 311
           +IL H L  ++    S++  +FS LSFPL+  I
Sbjct: 164 IILSHSL-FHISHLISFHFLFFSFLSFPLLSFI 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,967
Number of Sequences: 5004
Number of extensions: 38601
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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