Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30843
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362...    29   3.3  
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    28   4.3  
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    28   5.7  
07_01_0508 + 3786655-3787158,3787542-3787904,3788003-3788088,378...    27   7.5  
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142     27   10.0 

>12_01_0461 +
           3618414-3618782,3619664-3619794,3620177-3620294,
           3620602-3620654,3620758-3620807,3620912-3621010,
           3621511-3621620,3621773-3621900,3622071-3622161,
           3622610-3622693,3622863-3623083,3623449-3623527,
           3624134-3624283,3624326-3624470,3624604-3624983,
           3625096-3625197
          Length = 769

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 249 SSF-SYYLFWFSELSFPLVCTI 311
           SSF +YY ++F  + FPL+CT+
Sbjct: 541 SSFLAYYCYFFPRILFPLLCTV 562


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 385 KSHRASVANLFAKT*SFSSPTMDLRFSSGY 474
           KSHR  V   F K   F  P MD+ ++S Y
Sbjct: 759 KSHRGKVLAAFLKAVGFIIPLMDVEYASYY 788


>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 310 YSSYLCG*SDSMISKTSLASTAVIPKSHRASVANLFAKT*-SFSSPTMDLRFSSGYLLLK 486
           Y   L   SD+ +    L     +  SHR  + ++      + SSP +D+R     L+L 
Sbjct: 285 YCQLLSSQSDNNVKLIVLDRLHELRASHRDVMVDVVMDVLRALSSPNVDVRRKVLDLVLD 344

Query: 487 LFTPRNI 507
           L TPRN+
Sbjct: 345 LLTPRNV 351


>07_01_0508 +
           3786655-3787158,3787542-3787904,3788003-3788088,
           3788164-3788217,3788838-3789020,3789716-3789737
          Length = 403

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/42 (23%), Positives = 27/42 (64%)
 Frame = +3

Query: 210 FLILHHFLSVYLPSSFSYYLFWFSELSFPLVCTIFLILMWII 335
           +L+++H +S  +P+  + ++FW+ +++  L      IL+W++
Sbjct: 251 YLVMYH-ISFLIPNKKAAHIFWYVKVTVLLSLFHAGILIWVV 291


>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
          Length = 751

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 414 KIGYRSSMRLRYNSSGCE-RSLGYHAIRLST 325
           + G+RS +RLR  S G +   L Y A+R  T
Sbjct: 99  RCGHRSGVRLRVRSGGHDYEGLSYRAVRAET 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,547,358
Number of Sequences: 37544
Number of extensions: 250217
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)