BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30843 (553 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362... 29 3.3 02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 28 4.3 11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 28 5.7 07_01_0508 + 3786655-3787158,3787542-3787904,3788003-3788088,378... 27 7.5 11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 27 10.0 >12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294, 3620602-3620654,3620758-3620807,3620912-3621010, 3621511-3621620,3621773-3621900,3622071-3622161, 3622610-3622693,3622863-3623083,3623449-3623527, 3624134-3624283,3624326-3624470,3624604-3624983, 3625096-3625197 Length = 769 Score = 28.7 bits (61), Expect = 3.3 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%) Frame = +3 Query: 249 SSF-SYYLFWFSELSFPLVCTI 311 SSF +YY ++F + FPL+CT+ Sbjct: 541 SSFLAYYCYFFPRILFPLLCTV 562 >02_03_0220 + 16545571-16545573,16545717-16545818,16545980-16546008, 16549421-16553036 Length = 1249 Score = 28.3 bits (60), Expect = 4.3 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 385 KSHRASVANLFAKT*SFSSPTMDLRFSSGY 474 KSHR V F K F P MD+ ++S Y Sbjct: 759 KSHRGKVLAAFLKAVGFIIPLMDVEYASYY 788 >11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155, 3650306-3650815,3651700-3653757 Length = 968 Score = 27.9 bits (59), Expect = 5.7 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = +1 Query: 310 YSSYLCG*SDSMISKTSLASTAVIPKSHRASVANLFAKT*-SFSSPTMDLRFSSGYLLLK 486 Y L SD+ + L + SHR + ++ + SSP +D+R L+L Sbjct: 285 YCQLLSSQSDNNVKLIVLDRLHELRASHRDVMVDVVMDVLRALSSPNVDVRRKVLDLVLD 344 Query: 487 LFTPRNI 507 L TPRN+ Sbjct: 345 LLTPRNV 351 >07_01_0508 + 3786655-3787158,3787542-3787904,3788003-3788088, 3788164-3788217,3788838-3789020,3789716-3789737 Length = 403 Score = 27.5 bits (58), Expect = 7.5 Identities = 10/42 (23%), Positives = 27/42 (64%) Frame = +3 Query: 210 FLILHHFLSVYLPSSFSYYLFWFSELSFPLVCTIFLILMWII 335 +L+++H +S +P+ + ++FW+ +++ L IL+W++ Sbjct: 251 YLVMYH-ISFLIPNKKAAHIFWYVKVTVLLSLFHAGILIWVV 291 >11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 Length = 751 Score = 27.1 bits (57), Expect = 10.0 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = -2 Query: 414 KIGYRSSMRLRYNSSGCE-RSLGYHAIRLST 325 + G+RS +RLR S G + L Y A+R T Sbjct: 99 RCGHRSGVRLRVRSGGHDYEGLSYRAVRAET 129 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,547,358 Number of Sequences: 37544 Number of extensions: 250217 Number of successful extensions: 620 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 604 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 620 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1245816180 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -