Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30843
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24)                  42   4e-04
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)             31   0.63 
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   29   3.3  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             28   5.8  

>SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24)
          Length = 324

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 18/65 (27%), Positives = 36/65 (55%)
 Frame = -3

Query: 509 AMFLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDY 330
           A FLG++S + ++P+++   +  DEK ++L       A  D  I ++ + +   ++L  Y
Sbjct: 180 AHFLGIESLQEKHPKIEFHVLQEDEKSFLLENGFLDSAQKDQEIWSICSEDATQLVLDHY 239

Query: 329 PHKYE 315
           P KY+
Sbjct: 240 PDKYQ 244


>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
          Length = 810

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 231 KSDVKSEKSSDHKPEGPKIDPEK 163
           KS  K  K  DHKP+ PK  PEK
Sbjct: 743 KSPQKQPKRQDHKPKTPKASPEK 765


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 65   QQDRRTPRCGWRTCA 109
            Q+ RRTP C WR CA
Sbjct: 1940 QRRRRTPNCPWRQCA 1954


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 65  QQDRRTPRCGWRTCA 109
           Q+ RRTP C WR CA
Sbjct: 162 QRRRRTPYCPWRQCA 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,587
Number of Sequences: 59808
Number of extensions: 294158
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)