Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30843
(553 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF338735-1|AAK27451.1| 410|Homo sapiens hypothetical PHD zinc f... 75 1e-13
CR457273-1|CAG33554.1| 410|Homo sapiens PHF10 protein. 75 2e-13
BC110323-1|AAI10324.1| 410|Homo sapiens PHD finger protein 10 p... 75 2e-13
AL513547-4|CAI12317.1| 289|Homo sapiens PHD finger protein 10 p... 75 2e-13
AL513547-3|CAI12316.1| 410|Homo sapiens PHD finger protein 10 p... 75 2e-13
AK222612-1|BAD96332.1| 410|Homo sapiens PHD finger protein 10 i... 75 2e-13
AK001837-1|BAA91934.1| 410|Homo sapiens protein ( Homo sapiens ... 75 2e-13
BC020954-1|AAH20954.1| 408|Homo sapiens PHD finger protein 10 p... 69 1e-11
>AF338735-1|AAK27451.1| 410|Homo sapiens hypothetical PHD zinc
finger protein XAP135 protein.
Length = 410
Score = 75.4 bits (177), Expect = 1e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = -3
Query: 503 FLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPH 324
+LGV SFKR+YP+L+RR + EK Y+ + TE C LG+TA+ + EV+D+M+ +YP
Sbjct: 9 YLGVTSFKRKYPDLERRDLSHKEKLYLREPNVITETQCTLGLTALRSDEVIDLMIKEYPA 68
Query: 323 KYEEYRAYQRERQ 285
K+ EY +E++
Sbjct: 69 KHAEYSVILQEKE 81
>CR457273-1|CAG33554.1| 410|Homo sapiens PHF10 protein.
Length = 410
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = -3
Query: 503 FLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPH 324
+LGV SFKR+YP+L+RR + EK Y+ + TE C LG+TA+ + EV+D+M+ +YP
Sbjct: 9 YLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPA 68
Query: 323 KYEEYRAYQRERQ 285
K+ EY +E++
Sbjct: 69 KHAEYSVILQEKE 81
>BC110323-1|AAI10324.1| 410|Homo sapiens PHD finger protein 10
protein.
Length = 410
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = -3
Query: 503 FLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPH 324
+LGV SFKR+YP+L+RR + EK Y+ + TE C LG+TA+ + EV+D+M+ +YP
Sbjct: 9 YLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPA 68
Query: 323 KYEEYRAYQRERQ 285
K+ EY +E++
Sbjct: 69 KHAEYSVILQEKE 81
>AL513547-4|CAI12317.1| 289|Homo sapiens PHD finger protein 10
protein.
Length = 289
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = -3
Query: 503 FLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPH 324
+LGV SFKR+YP+L+RR + EK Y+ + TE C LG+TA+ + EV+D+M+ +YP
Sbjct: 9 YLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPA 68
Query: 323 KYEEYRAYQRERQ 285
K+ EY +E++
Sbjct: 69 KHAEYSVILQEKE 81
>AL513547-3|CAI12316.1| 410|Homo sapiens PHD finger protein 10
protein.
Length = 410
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = -3
Query: 503 FLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPH 324
+LGV SFKR+YP+L+RR + EK Y+ + TE C LG+TA+ + EV+D+M+ +YP
Sbjct: 9 YLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPA 68
Query: 323 KYEEYRAYQRERQ 285
K+ EY +E++
Sbjct: 69 KHAEYSVILQEKE 81
>AK222612-1|BAD96332.1| 410|Homo sapiens PHD finger protein 10
isoform a variant protein.
Length = 410
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = -3
Query: 503 FLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPH 324
+LGV SFKR+YP+L+RR + EK Y+ + TE C LG+TA+ + EV+D+M+ +YP
Sbjct: 9 YLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPA 68
Query: 323 KYEEYRAYQRERQ 285
K+ EY +E++
Sbjct: 69 KHAEYSVILQEKE 81
>AK001837-1|BAA91934.1| 410|Homo sapiens protein ( Homo sapiens
cDNA FLJ10975 fis, clone PLACE1001383, weakly similar to
ZINC-FINGER PROTEIN UBI-D4 . ).
Length = 410
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = -3
Query: 503 FLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPH 324
+LGV SFKR+YP+L+RR + EK Y+ + TE C LG+TA+ + EV+D+M+ +YP
Sbjct: 9 YLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPA 68
Query: 323 KYEEYRAYQRERQ 285
K+ EY +E++
Sbjct: 69 KHAEYSVILQEKE 81
>BC020954-1|AAH20954.1| 408|Homo sapiens PHD finger protein 10
protein.
Length = 408
Score = 68.9 bits (161), Expect = 1e-11
Identities = 32/73 (43%), Positives = 48/73 (65%)
Frame = -3
Query: 503 FLGVKSFKRRYPELKRRSIVGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPH 324
+LGV SFKR+YPE RR + EK Y+ + TE C LG+TA+ + EV+D+M+ +YP
Sbjct: 9 YLGVTSFKRKYPE--RRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDLMIKEYPA 66
Query: 323 KYEEYRAYQRERQ 285
K+ EY +E++
Sbjct: 67 KHAEYSVILQEKE 79
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,845,784
Number of Sequences: 237096
Number of extensions: 1407721
Number of successful extensions: 2849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2848
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -