Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30843
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067622-4|ABD63224.1| 338|Caenorhabditis elegans Hypothetical ... 46 2e-05
AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical ... 46 2e-05
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 31 0.55
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 31 0.55
AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 30 1.3
Z68316-6|CAA92682.2| 357|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 29 2.9
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 28 3.9
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 28 5.1
Z81533-11|CAE17829.1| 355|Caenorhabditis elegans Hypothetical p... 27 6.8
Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical pr... 27 9.0
>AF067622-4|ABD63224.1| 338|Caenorhabditis elegans Hypothetical
protein F33E11.6a protein.
Length = 338
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Frame = -3
Query: 500 LGVKSFKRRYPELKRRSIVGDEKDYV----LAKRLATEALCDLGITAVDASEVLDIMLSD 333
L +KSF R+YP+ RR + +E++++ +L E L + A+ ASE+ D+M SD
Sbjct: 85 LDIKSFSRKYPDFTRRKVNHEEREFLEWNFNVHKLLNETLL-RDMNAMRASEIHDMMQSD 143
Query: 332 YPHKYEEYR--AYQRERQ 285
+ Y EY+ QRER+
Sbjct: 144 FGDIYMEYKKVVSQRERE 161
>AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical
protein F33E11.6b protein.
Length = 447
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Frame = -3
Query: 500 LGVKSFKRRYPELKRRSIVGDEKDYV----LAKRLATEALCDLGITAVDASEVLDIMLSD 333
L +KSF R+YP+ RR + +E++++ +L E L + A+ ASE+ D+M SD
Sbjct: 85 LDIKSFSRKYPDFTRRKVNHEEREFLEWNFNVHKLLNETLL-RDMNAMRASEIHDMMQSD 143
Query: 332 YPHKYEEYR--AYQRERQ 285
+ Y EY+ QRER+
Sbjct: 144 FGDIYMEYKKVVSQRERE 161
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -2
Query: 273 RRDSN*MKMEDKLTK---SDVKSEKSSDHKPEGPKIDPEKLR 157
+ DS+ K EDK K + V + KSSD +P P++ P++++
Sbjct: 261 KTDSDGSKKEDKPKKVSIAPVSTNKSSDDEPSTPRVRPQRIK 302
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -2
Query: 273 RRDSN*MKMEDKLTK---SDVKSEKSSDHKPEGPKIDPEKLR 157
+ DS+ K EDK K + V + KSSD +P P++ P++++
Sbjct: 261 KTDSDGSKKEDKPKKVSIAPVSTNKSSDDEPSTPRVRPQRIK 302
>AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical
protein C23H5.7 protein.
Length = 644
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 192 VCDQKIFLILHHFLSVYLPSSFSYYLFWFSELSFPLVCTIFLILMWI 332
+C + H L Y+P + YY W +SF ++ +F ++++I
Sbjct: 24 ICKDILHDSFHRLLYFYVPFNSKYYYIWSFFVSFGVMYNMFAMVIFI 70
>Z68316-6|CAA92682.2| 357|Caenorhabditis elegans Hypothetical
protein K08E4.5 protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 192 VCDQKIFLILHHFLSVYLPSSFSYYLFWFSELSF 293
VC K+ +I +V +S +YYLFW S + F
Sbjct: 224 VCALKLKMITKEISTVISINSVNYYLFWISIIHF 257
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 252 KMEDKLTKSDVKSEKSSDHKPEGPKIDPEKLRQ 154
+++ +L+ S V++E S D E K+D +KLR+
Sbjct: 384 ELKRRLSTSSVENEISDDEYSESDKVDEDKLRK 416
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 252 KMEDKLTKSDVKSEKSSDHKPEGPKIDPEKLRQ 154
+++ +L+ S V++E S D E K+D +KLR+
Sbjct: 370 ELKRRLSTSSVENEISDDEYSESDKVDEDKLRK 402
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 252 KMEDKLTKSDVKSEKSSDHKPEGPKIDPEKLRQ 154
+++ +L+ S V++E S D E K+D +KLR+
Sbjct: 384 ELKRRLSTSSVENEISDDEYSESDKVDEDKLRK 416
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 411 IGYRSSMRLRYNSSGCERSLGYHAIRLST 325
IG RS + R GCE+SLG + LST
Sbjct: 510 IGARSMLTKRARQRGCEQSLGTYCRLLST 538
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 425 VLAKRLATEALCDLGITAVDASEVLDIMLSDYPHKYEEYRAYQRERQLTEPEE 267
V+ KRL + G +D +D+ S+ P Y E R RE QL + E
Sbjct: 254 VIRKRLDEFSQTPSGSLTIDEFSTVDLEHSEDPPAYRESRRKAREDQLRKEAE 306
>Z81533-11|CAE17829.1| 355|Caenorhabditis elegans Hypothetical
protein F36G9.16 protein.
Length = 355
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 413 RLATEALCDLGITAVDASEVLDIMLSDYPHKYEEYRAYQRERQLTEPEEIV 261
R+ T L +GI D +L ++L PH Y+ YR PE V
Sbjct: 64 RVYTINLFMIGIAICDFLRLLSVVLGALPHYYKLYRRSITPHNCIPPETYV 114
>Z72517-3|CAA96695.1| 717|Caenorhabditis elegans Hypothetical
protein T28F4.4 protein.
Length = 717
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 228 SDVKSEKSSDHKPEGPKIDPEKLRQD 151
SDV+SE D K E K D +K RQ+
Sbjct: 280 SDVESENEDDDKKEEEKEDVKKKRQE 305
>Z46791-7|CAA86760.2| 473|Caenorhabditis elegans Hypothetical
protein C09G5.1 protein.
Length = 473
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 216 ILHHFLSVYLPSSFSYYLFWFS 281
I HH + Y+P+S + WFS
Sbjct: 247 ITHHIIQSYIPTSLIVIISWFS 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,398,964
Number of Sequences: 27780
Number of extensions: 217094
Number of successful extensions: 665
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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