Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30843
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.67 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   0.89 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 HHFLSVYLPSSFSYYLFWFS 281
           HH +  + PS+    L WFS
Sbjct: 201 HHLIQTFAPSTLVVMLSWFS 220



 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 276 FSELSFPLVCTIFLILMWII 335
           +S + FP++  +F+IL W I
Sbjct: 365 YSRIGFPILFMLFIILYWPI 384


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 219 LHHFLSVYLPSSFSYYLFWFSELSFPLVCTIFLILMW 329
           LH+F ++  P   + ++   S + FP+   IF IL W
Sbjct: 429 LHNFTTM-TPQEIAQWIDRRSRIVFPVAFIIFNILYW 464


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +1

Query: 250 LHSVTISSGSVSCLSRW 300
           + S+++ SGS++ ++ W
Sbjct: 558 IESISVDSGSINTVAEW 574


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 276 FSELSFPLVCTIFLILMWII 335
           +S + FP+    F ++ WII
Sbjct: 407 YSRIVFPVCFVCFNLMYWII 426


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 276 FSELSFPLVCTIFLILMWII 335
           +S + FP+    F ++ WII
Sbjct: 407 YSRIVFPVCFVCFNLMYWII 426


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 276 FSELSFPLVCTIFLILMWII 335
           +S + FP+    F ++ WII
Sbjct: 345 YSRIVFPVCFVCFNLMYWII 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,597
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)