Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30843
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17340.1 68416.m02216 importin-related contains Pfam profile ...    27   6.3  
At1g43720.1 68414.m05023 hypothetical protein                          27   6.3  
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    27   8.3  

>At3g17340.1 68416.m02216 importin-related contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 822

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 446 VGDEKDYVLAKRLATEALCDL-GITAVDASEVLDIMLSDYPH 324
           VGD+ D V   RL  + L  + G++  +A+E LD++ +  PH
Sbjct: 3   VGDD-DSVQIVRLLDQTLTSIDGVSVREATEALDLLSTKLPH 43


>At1g43720.1 68414.m05023 hypothetical protein 
          Length = 314

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 253 HSVTISSGSVSCLSRWYARYSSYLCG*SDSMISKTSLAST 372
           HS  ISSGS S +  W A+++ +L G   S++  T+   T
Sbjct: 215 HSGGISSGSPSSVGNWEAKFTQFL-GSHLSIVGNTTKRCT 253


>At4g29060.1 68417.m04157 elongation factor Ts family protein similar
            to SP|P35019 Elongation factor Ts (EF-Ts) {Galdieria
            sulphuraria}; contains Pfam profiles PF00627: UBA/TS-N
            domain, PF00889: Elongation factor TS, PF00575: S1 RNA
            binding domain
          Length = 953

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 446  VGDEKDYVLAKRLATEALCDLGITAVDASEVLDIMLSDYPHKY---EEYRAYQRERQLTE 276
            V  E D+V       E + DL + AV   +V  + + D P +    E+    QRE  L++
Sbjct: 830  VNCETDFVGRSEKFKELVDDLAMQAVANPQVQYVSIEDIPEEIKQKEKEIEMQREDLLSK 889

Query: 275  PEEI 264
            PE I
Sbjct: 890  PENI 893


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,769,947
Number of Sequences: 28952
Number of extensions: 202329
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)