Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30842
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.9  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.3  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   4.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.9  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.9  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 529 GHSLSWGSPSNVRLGDT*HIHSSLIQTYKHT 437
           G+SLSW +P ++    +  + + + Q   HT
Sbjct: 174 GNSLSWNNPCSINSTSSQPVGTQIHQQTNHT 204


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 365 PWYQPSFTEVRKVLQLFRLRQINNG 439
           P  QP+    R   +  R++Q+NNG
Sbjct: 80  PQQQPASVARRNARERNRVKQVNNG 104


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 566 LSLANPRLYTNSRTLF 519
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 563 SLANPRLYTNSRTLFKLGFPKQC 495
           S  NP LY    + F+ GF K C
Sbjct: 346 SAVNPILYNIISSKFRSGFFKLC 368


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -3

Query: 691 WNFFSEQVKDLHGMRSSTQIMLCFMEPLLN----NAVGSDW*Y 575
           W+F +++ KD+   R + Q  +    P L     + +  DW Y
Sbjct: 170 WSFGTQKFKDMASTRYARQTFIFSAIPFLRDRGFDGLDIDWEY 212


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 98  KTVRSCLLYQSQCSSIVRGERLFALG 175
           K V  C L +S   + + G R  ALG
Sbjct: 496 KVVAECTLKESAAINQILGRRWHALG 521


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 98  KTVRSCLLYQSQCSSIVRGERLFALG 175
           K V  C L +S   + + G R  ALG
Sbjct: 388 KVVAECTLKESAAINQILGRRWHALG 413


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 196 RRSSAIKKKREIFKRAEQYVRNTA 267
           R S   KK+RE+ + A+Q   N A
Sbjct: 298 RFSDESKKRRELLRLAQQVNANIA 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,300
Number of Sequences: 336
Number of extensions: 3602
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)