Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30842
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    69   7e-13
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    68   1e-12
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    59   7e-10
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.7  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    27   3.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   3.5  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    25   8.1  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   8.1  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 32/53 (60%), Positives = 37/53 (69%)
 Frame = +3

Query: 258 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 416
           EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 62  EYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = +2

Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTP 514
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ +G P
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIP 147



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/25 (72%), Positives = 22/25 (88%)
 Frame = +1

Query: 505 GNPNLKSVRELVYKRGFAKLSGQRI 579
           G PNLK+VREL+YKRGF K++ QRI
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRI 169



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 103 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQY 252
           SK+    PES+LK            +    +++++  KK+  I KRAE Y
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESY 59


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 31/53 (58%), Positives = 38/53 (71%)
 Frame = +3

Query: 258 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 416
           EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 61  EYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 29/78 (37%), Positives = 44/78 (56%)
 Frame = +2

Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTPT*RVSVS*YTNVDSPS*V 568
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+ +G P  +               
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164

Query: 569 DNVLPITSNSIVEKRLHK 622
              +P++ N+I+E  L K
Sbjct: 165 KQRIPLSDNAIIEAALGK 182



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 124 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQY 252
           PES+LK            +    +++S+  KK+  I KRAE Y
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAY 58


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = +2

Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTP 514
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G P
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIP 145



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 27/57 (47%), Positives = 35/57 (61%)
 Frame = +3

Query: 246 TVRKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 416
           T    YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 56  TFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 505 GNPNLKSVRELVYKRGFAKLSGQRI 579
           G PNL SVREL+YKRGF K++GQRI
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRI 167


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 511 PNLKSVRELVYKRGFAKLSGQRITNHFQQHC*EEAP*NTTLSVLRTSFHGDLSLVRRKSS 690
           P+   +  +V  R   K +GQ  T   +QH   E P +TT   L +  HG   + RR+S 
Sbjct: 431 PSANDLNSVVNAR-VEKSTGQPSTPLNRQHYFNELPHSTTPVTLPSLIHGS-EIDRRRSG 488

Query: 691 KYASNF 708
              +NF
Sbjct: 489 FCLNNF 494


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 463 YCEYATYRRALHCLGNPNLKSVR 531
           YC YA Y    HCLGN +L S +
Sbjct: 117 YCMYAAY----HCLGNNDLDSAK 135


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +1

Query: 178 LQVTLKRRS--SAIKKKREIFKRAEQYVRNTASRNVMKSD*PDKHAIVATTTFPGKPNWH 351
           + VTL R     A+ + +E F    Q+V+NTA  + M    P+     A T       WH
Sbjct: 167 MPVTLSRADIVHALSRDKEFFAMFAQFVQNTAESHNMY---PELARFWAGTMMEVLVAWH 223

Query: 352 LSSE 363
            S+E
Sbjct: 224 SSNE 227


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 460 GYCEYATYRRALHCLGNPN 516
           GY EYAT+R  L  L +PN
Sbjct: 288 GYAEYATWRPHLAYLRDPN 306


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 492 LTLLGEPQLKECP*VSIQTWIRQAEWTTYYQSLPTALLRRGSIKHNIICV 641
           LTL    +++  P    Q WI ++  T    S  T +++RG++K  +  V
Sbjct: 331 LTLAEIMEIRASPRDPFQGWIVESSVTKGVGSSATVVVKRGTVKKGMYLV 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,756
Number of Sequences: 5004
Number of extensions: 58006
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)