BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30842 (714 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 69 7e-13 SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 68 1e-12 SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 59 7e-10 SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.7 SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C... 27 3.5 SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 3.5 SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 25 8.1 SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 25 8.1 >SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces pombe|chr 2|||Manual Length = 251 Score = 68.9 bits (161), Expect = 7e-13 Identities = 32/53 (60%), Positives = 37/53 (69%) Frame = +3 Query: 258 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 416 EYR ER++I L R+AR GNYYVP E KL FVIRIRGIN + PK+ K L Sbjct: 62 EYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114 Score = 60.9 bits (141), Expect = 2e-10 Identities = 25/42 (59%), Positives = 33/42 (78%) Frame = +2 Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTP 514 + RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G P Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIP 147 Score = 41.5 bits (93), Expect = 1e-04 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = +1 Query: 505 GNPNLKSVRELVYKRGFAKLSGQRI 579 G PNLK+VREL+YKRGF K++ QRI Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRI 169 Score = 26.6 bits (56), Expect = 3.5 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +1 Query: 103 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQY 252 SK+ PES+LK + +++++ KK+ I KRAE Y Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESY 59 >SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|Schizosaccharomyces pombe|chr 1|||Manual Length = 250 Score = 68.1 bits (159), Expect = 1e-12 Identities = 31/53 (58%), Positives = 38/53 (71%) Frame = +3 Query: 258 EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 416 EYR ER++I LAR+AR GNY+VP E KL FV+RIRGIN + PK+ K L Sbjct: 61 EYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113 Score = 59.7 bits (138), Expect = 4e-10 Identities = 29/78 (37%), Positives = 44/78 (56%) Frame = +2 Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTPT*RVSVS*YTNVDSPS*V 568 + RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G P + Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164 Query: 569 DNVLPITSNSIVEKRLHK 622 +P++ N+I+E L K Sbjct: 165 KQRIPLSDNAIIEAALGK 182 Score = 26.2 bits (55), Expect = 4.7 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 124 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQY 252 PES+LK + +++S+ KK+ I KRAE Y Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAY 58 >SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharomyces pombe|chr 1|||Manual Length = 249 Score = 58.8 bits (136), Expect = 7e-10 Identities = 26/42 (61%), Positives = 32/42 (76%) Frame = +2 Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTP 514 ++RKVL+L RL +INN VFVR NKA MLRI EPY+ +G P Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIP 145 Score = 56.4 bits (130), Expect = 4e-09 Identities = 27/57 (47%), Positives = 35/57 (61%) Frame = +3 Query: 246 TVRKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 416 T YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+ + PK K L Sbjct: 56 TFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112 Score = 44.8 bits (101), Expect = 1e-05 Identities = 19/25 (76%), Positives = 22/25 (88%) Frame = +1 Query: 505 GNPNLKSVRELVYKRGFAKLSGQRI 579 G PNL SVREL+YKRGF K++GQRI Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRI 167 >SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 27.1 bits (57), Expect = 2.7 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = +1 Query: 511 PNLKSVRELVYKRGFAKLSGQRITNHFQQHC*EEAP*NTTLSVLRTSFHGDLSLVRRKSS 690 P+ + +V R K +GQ T +QH E P +TT L + HG + RR+S Sbjct: 431 PSANDLNSVVNAR-VEKSTGQPSTPLNRQHYFNELPHSTTPVTLPSLIHGS-EIDRRRSG 488 Query: 691 KYASNF 708 +NF Sbjct: 489 FCLNNF 494 >SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 334 Score = 26.6 bits (56), Expect = 3.5 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 463 YCEYATYRRALHCLGNPNLKSVR 531 YC YA Y HCLGN +L S + Sbjct: 117 YCMYAAY----HCLGNNDLDSAK 135 >SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1649 Score = 26.6 bits (56), Expect = 3.5 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +1 Query: 178 LQVTLKRRS--SAIKKKREIFKRAEQYVRNTASRNVMKSD*PDKHAIVATTTFPGKPNWH 351 + VTL R A+ + +E F Q+V+NTA + M P+ A T WH Sbjct: 167 MPVTLSRADIVHALSRDKEFFAMFAQFVQNTAESHNMY---PELARFWAGTMMEVLVAWH 223 Query: 352 LSSE 363 S+E Sbjct: 224 SSNE 227 >SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp family |Schizosaccharomyces pombe|chr 2|||Manual Length = 430 Score = 25.4 bits (53), Expect = 8.1 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 460 GYCEYATYRRALHCLGNPN 516 GY EYAT+R L L +PN Sbjct: 288 GYAEYATWRPHLAYLRDPN 306 >SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual Length = 686 Score = 25.4 bits (53), Expect = 8.1 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = +3 Query: 492 LTLLGEPQLKECP*VSIQTWIRQAEWTTYYQSLPTALLRRGSIKHNIICV 641 LTL +++ P Q WI ++ T S T +++RG++K + V Sbjct: 331 LTLAEIMEIRASPRDPFQGWIVESSVTKGVGSSATVVVKRGTVKKGMYLV 380 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,812,756 Number of Sequences: 5004 Number of extensions: 58006 Number of successful extensions: 155 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 154 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 333194204 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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