Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30842
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    65   5e-11
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    65   5e-11
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    45   7e-05
06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867           28   8.5  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 28/42 (66%), Positives = 36/42 (85%)
 Frame = +2

Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTP 514
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+G P
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 142



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
 Frame = +3

Query: 255 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-* 431
           +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK+ K    L   +  
Sbjct: 56  QEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIF 115

Query: 432 TMVCLYV*IRLL*ICYVSPSLTLLGEPQLKECP*VSIQTWI-RQAEWTTYYQSLP---TA 599
             V L V    + +          G P LK     S++  I ++       Q +P     
Sbjct: 116 NGVFLKVNKATINMLRRVEPYVAYGYPNLK-----SVRELIYKRGYGKLNKQRIPLQNNK 170

Query: 600 LLRRGSIKHNIICVEDLI 653
           ++  G  KH+IIC+EDL+
Sbjct: 171 VIEEGLGKHDIICIEDLV 188



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 505 GNPNLKSVRELVYKRGFAKLSGQRI 579
           G PNLKSVREL+YKRG+ KL+ QRI
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRI 164



 Score = 31.5 bits (68), Expect = 0.69
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 109 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVR 258
           K   VPESVLK             +  L  +  A++ ++ IF RA+QY +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQ 56


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 28/42 (66%), Positives = 36/42 (85%)
 Frame = +2

Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTP 514
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+G P
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 141



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = +3

Query: 255 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 416
           +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK+ K    L
Sbjct: 55  EEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 505 GNPNLKSVRELVYKRGFAKLSGQRI 579
           G PNLKSVREL+YKRG+ KL+ QRI
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRI 163


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 392 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTPT*RVSVS*YTNVDSPS*VD 571
           +R++L+  RL Q+  GVF++   AT+  L + EP+I +G P  + +V           +D
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLK-NVKDLIYKKGRGFLD 162

Query: 572 -NVLPITSNSIVEKRL 616
               P+TSN ++EK L
Sbjct: 163 KEPFPLTSNDLIEKAL 178


>06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867
          Length = 237

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 568 HSAWRIHVCILTHGHSLSWGSPSNVRLGDT*HI 470
           H AWR H+ + + G+     + S + LG T HI
Sbjct: 149 HRAWRFHLRLPSLGYGYHIANSSRLNLGRTHHI 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,038,195
Number of Sequences: 37544
Number of extensions: 366567
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)