Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30842
(714 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 79 4e-15
SB_43135| Best HMM Match : CMAS (HMM E-Value=0) 30 1.6
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_56002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 29 4.9
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 8.6
SB_8895| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 79.0 bits (186), Expect = 4e-15
Identities = 47/79 (59%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +2
Query: 389 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTPT*RVSVS*YTNVDSPS*V 568
+VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+G P + SV V
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLK-SVRELIYKRGYGKV 159
Query: 569 DNV-LPITSNSIVEKRLHK 622
D + +T NSIVEK L K
Sbjct: 160 DKQRVALTDNSIVEKVLGK 178
Score = 71.3 bits (167), Expect = 7e-13
Identities = 34/54 (62%), Positives = 40/54 (74%)
Frame = +3
Query: 255 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 416
KEYR KE DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPK K L
Sbjct: 56 KEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 97 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVRNTASRN 276
+D K+P VPE++LK + L ++ K++EIFKRAE+YV+ +
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 277 V 279
V
Sbjct: 63 V 63
>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
Length = 254
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 534 VSIQTW--IRQAEWTTYYQSLPTALLRRGSIKHNIICVED 647
VSI+ + + Q W TY+Q L L + GS IIC+++
Sbjct: 105 VSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQIICIDE 144
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 295 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 432
PDK A+ TTT P + ++ T + R P S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408
>SB_56002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 700 SRTWNFFSEQVKDLHGMRSSTQIMLCFMEPLLNNAVGSD 584
S W +++E K L+ SS +++ +EPLLN G +
Sbjct: 206 SEAWQYYAELGKGLNLFESSGTLVVKELEPLLNLQFGDE 244
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 246 TVRKEYRI--KERDEIRLARQARNRGNYYVP 332
++ ++YR K RD +AR+ R+RG YY+P
Sbjct: 473 SISEKYRSSGKIRDTSSIARETRSRGPYYLP 503
>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 584 LVIRCPLSLANPRLYTNSRTLFKLGFPKQCKARRYVA 474
L +R SLANP LYT +T F+L K+ + R +A
Sbjct: 286 LFLRFLSSLANPLLYTFFKTDFQLALKKRNERIRRIA 322
>SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 364
Score = 27.9 bits (59), Expect = 8.6
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = -2
Query: 323 VVATIACLSG*SDFITFLDAVFLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLR 144
++ T AC S F+T L + AL+ ++ FF + R +S L +R+ +++
Sbjct: 83 LLGTTACSI--SAFLTILSFIASVMSLALIAVNRFFFIVRWRSYS----SLFKRSRVVI- 135
Query: 143 CLSTDSGTAGSFLLSSFPLTG 81
+S D G S LLSS PL G
Sbjct: 136 YISIDWGI--SLLLSSPPLLG 154
>SB_8895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -3
Query: 700 SRTWNFFSEQVKDLHGMRSSTQIMLCFMEPLLNNAVGSDW*YVVHSAWRIHVCILTHGHS 521
S+T N SE K H I L ++PL N G V R + CI++
Sbjct: 133 SKTCNALSEWRKR-HDRACGIGISLYELDPLTNLCAGEPVADVFAVVARPNNCIISLADG 191
Query: 520 LSWGSPSNV 494
+SWG+ S +
Sbjct: 192 VSWGTKSRL 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,107,629
Number of Sequences: 59808
Number of extensions: 440388
Number of successful extensions: 944
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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