Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30842
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 77 1e-14
AL117202-24|CAD27612.1| 565|Caenorhabditis elegans Hypothetical... 31 1.1
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 29 3.3
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 29 3.3
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 29 3.3
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 3.3
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 3.3
AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical ... 29 4.4
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/76 (52%), Positives = 49/76 (64%)
Frame = +2
Query: 395 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGTPT*RVSVS*YTNVDSPS*VDN 574
RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWG P + N
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161
Query: 575 VLPITSNSIVEKRLHK 622
+PIT N+IVE+ L K
Sbjct: 162 RVPITDNTIVEQSLGK 177
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/49 (53%), Positives = 38/49 (77%)
Frame = +3
Query: 255 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 401
+EYR +++ +RL R+A +G++YVP E K+AFV+RIRGINQ+ PK K
Sbjct: 55 QEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1
Query: 103 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVRNTASRNVM 282
+KK+P VPE+VLK Q + + +KK + FKRAE+YV+ RN
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQE--YRNAQ 61
Query: 283 K 285
K
Sbjct: 62 K 62
>AL117202-24|CAD27612.1| 565|Caenorhabditis elegans Hypothetical
protein Y47D3A.30 protein.
Length = 565
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 508 SPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 383
+PS RL H H+ L Q +++ I Q K++Q F GE
Sbjct: 497 APSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 323 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 457
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical
protein W06A11.4 protein.
Length = 347
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +1
Query: 214 KKKREIFKRAEQYVRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 393
KK+R++ ++ + R ASR +K K A +T P +PN + S S S ++ +
Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80
Query: 394 P*SSATV*TAP 426
S + + P
Sbjct: 81 RSSQVKIRSVP 91
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 644 LNTDNVVFYGASSQQCCWK*LVIRC 570
L+ +FY A SQ+C WK LV C
Sbjct: 166 LSCPTPLFYDADSQKCIWKSLVEEC 190
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 644 LNTDNVVFYGASSQQCCWK*LVIRC 570
L+ +FY A SQ+C WK LV C
Sbjct: 166 LSCPTPLFYDADSQKCIWKSLVEEC 190
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 323 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 457
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 323 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 457
L R Q+ PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377
>AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical
protein F36F12.1 protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 314 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 436
+Q++R G Q+GI PW P F++V R L+ R ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,501,742
Number of Sequences: 27780
Number of extensions: 321542
Number of successful extensions: 775
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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