Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30842
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 577 YVVHSAWRIHVCILTHGHSLSWGSPSN 497
           Y+V  AW I    ++    L WGS +N
Sbjct: 77  YIVILAWAIFYFFMSMRSELPWGSCNN 103


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 576 YYQSLPTALLRRGSIKHNIICVEDLIPWRSFTCS 677
           YYQ          S+K+ I  VE + P +S  CS
Sbjct: 4   YYQMKQITNSTTMSVKNEISTVEPVDPVKSLVCS 37


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 640 LRTSFHGDLSLVRRKSSKYASNFLW 714
           L+    GD + V+RKS + ++ +LW
Sbjct: 437 LKKPRQGDGAAVKRKSREGSTTYLW 461


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 170 LGDYRLR*RGVLLPSRRRGKSS 235
           + DY++  + +LLP R  GKS+
Sbjct: 128 VADYKIEGKVLLLPVRGAGKSN 149


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 360 RIRGINQVSPKSVKFCNCLDC 422
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 186 YAKEAFFCHQEEEGNLQEG*TVRKEYRIKERDEIR 290
           YA + FF    ++  L+    +  EYR+ E D ++
Sbjct: 82  YAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLK 116


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 356 HPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPY 496
           H   W Q  F  ++ +  +      N G+  RL   T  + RI + Y
Sbjct: 2   HHRMWLQQIFILLQMIHLIAWASLENTGISDRLENVTQTISRILDGY 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,703
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)