Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30841
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.7  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   3.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   3.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   9.0  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   EQKSNKPERVRNRIRKPASAAKTPSVTFQV 93
           + + N    + N +  PAS  +TP  T Q+
Sbjct: 411 DSEENSQSDITNNVNSPASMNQTPPPTAQM 440


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 562 LKYVTQKRKKDWTHFDR 612
           ++++TQKR +DW    +
Sbjct: 89  IRHLTQKRARDWERLSK 105


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 622 SFLVCQSESSLFFVFESRILSK 557
           +FL CQ E    FV+  RIL +
Sbjct: 341 NFLQCQDEKFESFVYYHRILGE 362


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 486 FSKSLMYRLALTVWRI*ITYHRLY 415
           F  +  +  ALTVW +    +RLY
Sbjct: 10  FKLNTFFLKALTVWHVENPTYRLY 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,512
Number of Sequences: 336
Number of extensions: 3141
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)