Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30841
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0442 - 15967204-15967501,15967954-15968126,15968581-159687...    30   1.4  
01_06_0380 - 28874699-28874732,28875077-28876116                       29   3.3  
01_06_0782 + 31969677-31969767,31969863-31969960,31970059-319702...    29   4.4  

>04_03_0442 -
           15967204-15967501,15967954-15968126,15968581-15968716,
           15969064-15969288,15969792-15970053,15970062-15970169,
           15970337-15970595,15971188-15971199
          Length = 490

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 141 HFFIHCPLSRTDFARNHLESNRWCFSRTGWFPDSVSYS 28
           H FIH       FARNHLES  W     G   D V ++
Sbjct: 122 HLFIHEFEETISFARNHLESMIWDSVLKGPLADQVKHA 159


>01_06_0380 - 28874699-28874732,28875077-28876116
          Length = 357

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 43  IRKPASAAKTPSVTFQVIPSEISPTQWAVYEEMEDLPEGISYKMPIIKGDPQHSQK 210
           ++  +  AK  SV FQ I S       A+ EE+EDL + +  +    K D + S +
Sbjct: 207 LKDTSDKAKQNSVVFQYIASSSDAKVLALREELEDLQKLLQAEKDEFKADKRDSNQ 262


>01_06_0782 +
           31969677-31969767,31969863-31969960,31970059-31970235,
           31970367-31970467,31970626-31970701,31970827-31970886,
           31970979-31971215,31971612-31971686,31971981-31972039,
           31972110-31972201,31972463-31972623,31972964-31973176
          Length = 479

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = -1

Query: 191 SPLIIGILYDIPSGKSSISSYTAH*VGLISLGITWKVTDGVLAALAGFLILFRTLSGL 18
           +PL IGIL D   G  + S+ +   VGL  LG T   +  V+   AGF+I F  L+ +
Sbjct: 303 NPLGIGILLDGLFGTGTGSTVSVENVGL--LGSTRIGSRRVIQISAGFMIFFSMLAAV 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,927,491
Number of Sequences: 37544
Number of extensions: 273080
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)