Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30841
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm rec...    30   1.3  
AF100305-5|AAN65285.1|  353|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical ...    28   5.1  
U80452-9|AAB37854.2|  179|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    27   9.0  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    27   9.0  

>AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 262 protein.
          Length = 353

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 269 IFKIFRTSSS*ILKVERSWYFCECCGSPLIIGILYDIPSG 150
           I++ F  ++S  LK+  SW        PLI G+LY I  G
Sbjct: 109 IYRFFSVTNSRYLKIFDSWLIIPIFTVPLINGVLYMITGG 148


>AF100305-5|AAN65285.1|  353|Caenorhabditis elegans Hypothetical
           protein W04B5.3c protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  PASAAKTPSVTFQVIPSEISPTQWAVYEEMEDLPEG 159
           P SA  TP +  Q +P ++S  Q  +Y+  + +P G
Sbjct: 304 PQSANSTPGIP-QPLPQQMSRQQAPIYQNQQQMPPG 338


>AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3a protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  PASAAKTPSVTFQVIPSEISPTQWAVYEEMEDLPEG 159
           P SA  TP +  Q +P ++S  Q  +Y+  + +P G
Sbjct: 304 PQSANSTPGIP-QPLPQQMSRQQAPIYQNQQQMPPG 338


>AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3b protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  PASAAKTPSVTFQVIPSEISPTQWAVYEEMEDLPEG 159
           P SA  TP +  Q +P ++S  Q  +Y+  + +P G
Sbjct: 304 PQSANSTPGIP-QPLPQQMSRQQAPIYQNQQQMPPG 338


>U80452-9|AAB37854.2|  179|Caenorhabditis elegans Hypothetical
           protein C16C8.12 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 28  RVRNRIRK-PASAAKTPSVTFQVIPSEISPTQWAVYEEMEDLPEGISYKMPIIKGDPQHS 204
           R++N  R+ P+SA        Q +  +I   Q  +++EM+ + E +  ++  +K + +H+
Sbjct: 20  RIQNEFREIPSSAGNALLKDTQEMCQKILKKQDELHDEMKHVQESLMSELNSVKNELKHA 79

Query: 205 QKYQD 219
           +   D
Sbjct: 80  KSIND 84


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 43  IRKPASAAKTPSVTFQVIPSEISPTQ 120
           ++K A  +KTP+V+  VIP   +PT+
Sbjct: 154 VQKQARGSKTPAVSTPVIPPRSAPTK 179


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 43  IRKPASAAKTPSVTFQVIPSEISPTQ 120
           ++K A  +KTP+V+  VIP   +PT+
Sbjct: 154 VQKQARGSKTPAVSTPVIPPRSAPTK 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,014,580
Number of Sequences: 27780
Number of extensions: 277153
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)