Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30841
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05760.1 68415.m00620 xanthine/uracil permease family protein...    28   4.8  
At1g70450.1 68414.m08105 protein kinase family protein contains ...    28   6.4  
At4g01000.1 68417.m00135 ubiquitin family protein low similarity...    27   8.4  
At3g25550.1 68416.m03177 F-box family protein                          27   8.4  

>At2g05760.1 68415.m00620 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 520

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -1

Query: 179 IGILYDIPSGKSSISSYTAH*VGLISLGITWKVTDGVLAALAGFLILFRTL 27
           IG+L D   G  + S+     VGL  LG+T   +  V+   AGF+I+F TL
Sbjct: 322 IGVLLDGLFGTGTGSTVLVENVGL--LGLTRVGSRRVVQVSAGFMIVFSTL 370


>At1g70450.1 68414.m08105 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 394

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 19  KPERVRNRIRKPASAAKTPSVTFQVIPSEISPTQWAVYEEMEDLPEGIS 165
           K ++ +     P+S+   PSV   V+ S    T +  YEE+ED+ EG S
Sbjct: 5   KNQKKKETADSPSSSPTAPSVDSAVMGS--GQTHFT-YEELEDITEGFS 50


>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
           SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
           profile PF00240: Ubiquitin family
          Length = 415

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  TFQVIPSEISPTQWAVYEEMEDLPEGIS 165
           +F V+  EI+  Q  + EEM DLP  ++
Sbjct: 263 SFDVVKEEITGVQGIIEEEMNDLPVSVA 290


>At3g25550.1 68416.m03177 F-box family protein 
          Length = 179

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -3

Query: 123 PLSRTDFARNHLESNRWCFSRTGWFPDSVSYSF 25
           PL+R    +N+L+SN+  FSR G+  DSV+ ++
Sbjct: 128 PLARIQ-RKNYLDSNKVEFSRLGFGKDSVTGTY 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,854,691
Number of Sequences: 28952
Number of extensions: 245036
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)